Query= MSMg01no446_m09.b1 MSMg01no446_m09.b1 CHROMAT_FILE:
MSMg01no446_m09.b1 PHD_FILE: MSMg01no446_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:24 2005
(247 letters)
>mm_chr1_161627597_161628243
Length = 647
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%)
Strand = Plus / Minus
Query: 1 taggaggcctgtcagatggggacaggggatttggatggctataaagagctgccagctttc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 taggaggcctgtcagatggggacaggggatttggacggctataaagagctgccagctttc 386
Query: 61 agctgttgtcatgaggagtcaattttgcttttatcctctgccaggcccctaacaccaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctgttgtcatgaggagtcaattttgcttttatcctctgccaggcccctaacaccaaaa 326
Query: 121 gtaaaacatctgatgataaccggtggcattggccttgaaagctaggaaaaagacagaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaaaacatctgatgataaccggtggcattggccttgaaagctaggaaaaagacagaagt 266
Query: 181 aaaccacagcagaaactcaggttggttaattcggtcaaatgactggcatcgttccatgaa 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 aaaccacagcagaaactcaggttggttaattcggtcaaatgactggcctcgttccatgaa 206
Query: 241 gagat 245
|||||
Sbjct: 205 gagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no446_m09.g1 MSMg01no446_m09.g1 CHROMAT_FILE:
MSMg01no446_m09.g1 PHD_FILE: MSMg01no446_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:24 2005
(447 letters)
>mm_chr1_161494273_161495119
Length = 847
Score = 737 bits (381), Expect = 0.0
Identities = 441/483 (91%), Gaps = 36/483 (7%)
Strand = Plus / Plus
Query: 1 ttttttttgtctcttttctcttctttttcttttttgtttc-------------------- 40
||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ttttttttgtctcttttctcttctttttcttttttgtttccatgtgtgaggaataatatg 224
Query: 41 -catatttggttttgtgggtttcatttgtttgctcaccaatatatcctctgtgccatcag 99
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 225 gcatatttggttttgtgggtttcatttgtttgctcaccgatatatcctctgtgccatcag 284
Query: 100 cttttcagattgatgttataacccacagccttctgctttgtgttgttgctgttgttgtt- 158
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 cttttcagcttgatgttataacccacagccttctgctttgtgttgttgttgttgttgttg 344
Query: 159 -----------gtcgtcgt---ccacctggtagattaaacacaatgatttctggaagttt 204
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttgttgtcatcgtcgtcgtcgcccacctggtagattaaacacaatgatttctggaagttt 404
Query: 205 taatttgcactttttcctgatggctagttatatttacttgtattcttcattttatgtctt 264
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 405 taatttgcactttttcctgatggctagttatatttacttgtattctttattttatgtctt 464
Query: 265 ttttcatctttctattggcttgtttattgatttgtagttcaagaagacttctctgatgac 324
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttttcatctttctattggctggtttattgatttgtagttcaagaagacttctctgatgac 524
Query: 325 agatctatatgtatagcttcattaagatgataggaatagccaggtataaactaagtctac 384
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agatctatatgtaaagcttcattaagatgataggaatagccaggtataaactaagtctac 584
Query: 385 atcctaccctagctataaatgcagaggttatgaaattcaaacattttatagacatttatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atcctaccctagctataaatgcagaggttatgaaattcaaacattttatagacatttatt 644
Query: 445 cag 447
|||
Sbjct: 645 cag 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
