BAC Information

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BAC

Clone NameMSMg01-447C07
Chromosome1 (Build37)
Map Location 123,733,590 - 123,733,980
singlet/doubletsinglet
Overlap genenone
Upstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447C07.T7 (MSMg01no447_c07.b1)MSMg01-447C07.TJ (MSMg01no447_c07.g1)
ACCAG535671AG535672
length756782
length of high quality
(start - end)
575 (47 - 621)394 (78 - 471)
definitionCHROMAT_FILE: MSMg01no447_c07.b1 PHD_FILE: MSMg01no447_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:54 2005CHROMAT_FILE: MSMg01no447_c07.g1 PHD_FILE: MSMg01no447_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTTTCCAACTTTTATCATGAATGGGTGTTGAATCTTG
TCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGTTTTTTGTCTTT
GAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACC
ATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCT
TTAATGTGTTCTTGGATTCGGTTAGTGAGAATTTTATTGAGGATTTTTGC
ATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT
CTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTG
GGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGG
AATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCTGTCTG
GTCCTGGGCTTTTATTTGCTGGGAGACTATTTATAACTGCTTCTATTTCT
TTACGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTT
TGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCA
GTTTTGTTGAGTATAGGCTTTTGTAGAAAGATCTGATGGTGTTTTGGATT
TCTTCGGATCTGTTGTTATGCCACCCTTTTCCATTCGAATTTGATATTTA
GGATTN
NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAAAGCCTAATTTAGATCAT
GAGACTACACACCTATCATTATGGGAAAGAACAAATTGGGTCATTTGAGT
CTTGGTCATATTTTCATAGCTTAGGAAAGGAGACTTGGTAGAGATGTTTT
AGGGCAGATAAGGTTAGATTTCAGAGGCTGAATCAGAAATACAGAGGAGC
CTGAAGACCTTGCTGCTCAAAATGTGGACTTGAGAGTTGGACCCTTAGAA
CCCAAGTAAAAGCCAGGCATGGTGGTGTATGCTTGCAATCCTAATAATGG
AGAGGGGAGGCAGGCAGATCTCTGGCCTAGCCAGTAAATTCTAGGCCAGT
CAGAGACACAGTCTCAAAAAAATCAAGTCAATATGGATGCCTCCTGAGGA
ATGATAGCAGCGTTGATAGGCAATTGGCACATGCGAATCTGTATACATAA
CACACACACACACACACACTCTCCCTATTTCATTATCCAATTTCTTGTCT
TGTATTTCCTCTTGATATGCCGCTTGGTCTATAATACGTGGTCTTAGTTA
GACTGTGTACTGAATTATGGTTTTGGGCGCCCTCCTTTGGCGTACTTCAT
TTAAATTTCCCTATTCCCCATCTTTTAGGCCTTCTTGTTTTTCCTCAGTA
TTTTGGCCCTTTGTGTGTCCTTTATCCTTAATTAACTACTTTTTTCCTGC
TCGTTTTTTGTTGGTTTCGTCCTCCCATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_c07.g1 MSMg01no447_c07.g1 CHROMAT_FILE:
MSMg01no447_c07.g1 PHD_FILE: MSMg01no447_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:54 2005
         (394 letters)



>mm_chr1_123733390_123734180
          Length = 791

 Score =  681 bits (352), Expect = 0.0
 Identities = 383/394 (97%), Gaps = 3/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaaagcctaatttagatcatgagactacacacctatcattatgggaaagaacaaatt 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 201 aagaaaagcctaatttagatcatgagactacac--ctatcattatgggaaagaacaaatt 258

                                                                       
Query: 61  gggtcatttgagtcttggtcatattttcatagcttaggaaaggagacttggtagagatgt 120
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 gggtcctttgagtcttggtcatattttcatagcttaggaaaggagacttg-tagagatgt 317

                                                                       
Query: 121 tttagggcagataaggttagatttcagaggctgaatcagaaatacagaggagcctgaaga 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 tttagggcagataaggttagatttcagaggctgaattagaaatacagaggagcctgaaga 377

                                                                       
Query: 181 ccttgctgctcaaaatgtggacttgagagttggacccttagaacccaagtaaaagccagg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 ccttgctgctcaaaatgtggacttgagagttgaacccttagaacccaagtaaaagccagg 437

                                                                       
Query: 241 catggtggtgtatgcttgcaatcctaataatggagaggggaggcaggcagatctctggcc 300
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 438 catggtggtgtatgcttgcaatccttgtaatggagaggggaggcaggcagatctctggcc 497

                                                                       
Query: 301 tagccagtaaattctaggccagtcagagacacagtctcaaaaaaatcaagtcaatatgga 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 498 tagccagtaaattctaggccagtcagagacacagtctcaaaaaagtcaagtcaatatgga 557

                                             
Query: 361 tgcctcctgaggaatgatagcagcgttgataggc 394
           || |||||||||||||||||||| ||||||||||
Sbjct: 558 tgtctcctgaggaatgatagcagtgttgataggc 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 791
Length adjustment: 9
Effective length of query: 385
Effective length of database: 782
Effective search space:   301070
Effective search space used:   301070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)