BAC Information

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BAC

Clone NameMSMg01-447E06
Chromosome1 (Build37)
Map Location 46,683,816 - 46,684,130
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
Downstream geneSlc39a10, EG227061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447E06.T7 (MSMg01no447_e06.b1)MSMg01-447E06.TJ (MSMg01no447_e06.g1)
ACCAG535764AG535765
length760760
length of high quality
(start - end)
606 (46 - 651)425 (80 - 504)
definitionCHROMAT_FILE: MSMg01no447_e06.b1 PHD_FILE: MSMg01no447_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:06 2005CHROMAT_FILE: MSMg01no447_e06.g1 PHD_FILE: MSMg01no447_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCATAGTTACACACTATTGGCTTATTCAAACATCAGCAGAAAAA
TTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTTT
AGATAGCCCTGTTATGTCCTCACATTCCTCTTTCTCTTTAAGGTTAAGCT
GTTCCCAGGAATGTTTTAACTACAGGGCATACCTGGGTTTGTTTTTCTTT
ATTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAAGCAGCAGTTTCTG
AGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCACCAT
CATATGCCCTTTTGCTCTTTCTTCTTAAGAATCTATAATTAGAAGGAAGA
GGGTAATTTTCAGACAGTACCAACAAAATATATTCAAAGTGTATCTGTAT
AGCAACTACAAAAATCTTTATTGAACAGCACGTGAAGATGGAATCTGGTT
TGAAAATACACTCAAATGTGCATATGGTGCCTACTTCATATAAGATACAG
TAAAATGTGTTTTGTGAAACACTGCAAAATGGGACATGACTCTGGTCCTG
GTTGGTGAGGCATGCAAATGAAGTGGTTAAGTAGAAACTCAAAGCATGTA
CTCACAGATGATTGGACTACAAGATGTTCTGAGAGGTAAATTCAGTTATA
TGTGAGTGGAAAACAGGGGCTGCACTGGTCCTTTGTGGAGGGGGCAAGAA
ATTCTACATN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCATGTCCTGAATTTTCTA
TTGTTTTTATGTATTTAGTTATGATTTTAAAATGCAAACATCTGATCATT
ATTACCACTAGTCCAGATGTGACCACAACTGTCAATTACATAAGTGTTGC
AGGATATTTGATCACATTGTGAACCCTGAGATTGTGTTTACTGGGAAAAA
AAAACTGTTTCTAGTTGTGGTGAGCCTTAGCACATACTTTTAATCCCAAA
CAATGAAGATAAAGAGTGTGTATTTTTTTTCACCCACGTTTGAAAGTGCT
ACCTATTGAGTGGCAGACAAAGAAACAAATCAGAGGATAGAATAGGATAT
GCTCAACTCTTACAAGAAGAGAGGGGGAAGGGAAGCTATAAGAGGGAGCA
AAGCAGAAAAAAAATGGGGTGAGGAAGAAGTTTTACCAGGAGAGTTTTTG
CAGAGATCAGTTGAAGGGATAACAAGCTAGACCTTGGTGATTGACGAATG
ACCTATAGTATGACAATGAGCCTGAGACTACACCATATTGTCCACATTAG
TATGAGATTACTCATATCCTTTCCTATCTACACTGATAGGATTCTGGTTG
ATTCTTCCTTCTTGTACAAGTATTCTTGATCCCTAATTGCTTTCTGTTAC
TCCTCTTACTTTGATTTCTTACTATTTTTCTATTGCTTCGTCTTCCCTCC
TTTTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_e06.g1 MSMg01no447_e06.g1 CHROMAT_FILE:
MSMg01no447_e06.g1 PHD_FILE: MSMg01no447_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:06 2005
         (425 letters)



>mm_chr1_46683816_46684640
          Length = 825

 Score =  547 bits (283), Expect = e-160
 Identities = 306/323 (94%), Gaps = 17/323 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccatgtcctgaattttctattgtttttatgtatttagttatgattttaaaatgcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agccatgtcctgaattttctattgtttttatgtatttagttatgattttaaaatgcaaac 256

                                                                       
Query: 61  atctgatcattattaccactagtccagatgtgaccacaactgtcaattacataagtgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atctgatcattattaccactagtccagatgtgaccacaactgtcaattacataagtgttg 196

                                                                       
Query: 121 caggatatttgatcacattgtgaaccctgagattgtgtttactggg-aaaaaaaaactgt 179
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 195 caggatatttgatcacattgtgaaccctgagattgtgtttactgggaaaaaaaaaactgt 136

                                                                       
Query: 180 ttctagttgtggtgagccttagcacatacttttaatcccaaacaatgaagataaagagtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ttctagttgtggtgagccttagcacatacttttaatcccaaacaatgaagataaagagtg 76

                                                                       
Query: 240 tgta--------ttttttttcacccacgtttgaaagtgctacctattgagtggcagacaa 291
           ||||                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tgtagaaggcag--------cacccacgtttgaaagtgctacctattgagtggcagacaa 24

                                  
Query: 292 agaaacaaatcagaggatagaat 314
           |||||||||||||||||||||||
Sbjct: 23  agaaacaaatcagaggatagaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)