BAC Information

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BAC

Clone NameMSMg01-447I02
Chromosome1 (Build37)
Map Location 33,690,882 - 33,840,237
singlet/doubletdoublet
Overlap genePrim2, 1700001G17Rik, Rab23, Bag2, Zfp451
Upstream geneKhdrbs2, EG633498, LOC213711, LOC100040828, EG666108
Downstream geneOTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447I02.T7 (MSMg01no447_i02.b1)MSMg01-447I02.TJ (MSMg01no447_i02.g1)
ACCAG535942AG535943
length747742
length of high quality
(start - end)
567 (49 - 615)537 (81 - 617)
definitionCHROMAT_FILE: MSMg01no447_i02.b1 PHD_FILE: MSMg01no447_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:25 2005CHROMAT_FILE: MSMg01no447_i02.g1 PHD_FILE: MSMg01no447_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,839,675 - 33,840,237)(33,690,882 - 33,691,418)
sequence
GACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGGAAATAGCTTTTCCATTTTATATGAACAAGGGAGCTTG
ATTGTGTTTGTGAGTCTAAGATTTTGAACACCTGGTTGTAACTGGGACCG
TCTCCTTGATGCTTTGCTCATTCCCACTGTTGTGTTATTCTGATGATCAG
TCCAGTGCACAATTCTCTGAAAGAGTAAACTAGGAATTTATATTATGATG
TAGGACTCAGAACAAATGCAGCTAATTCTGGAACAAAAAGATCATTCCAA
CGTGGAGGCAGGATGTGGAGGTCTGAGAAGCCAATTTTGTGTCCTATAAT
GCACTGTAACAAGGAATTTGACAATGGGCACCTTCTGTTGGGACATTTGA
AAAGGTAAGCAGGGCACTCTGGATTCAAAGGTTAAAGGTTAGTCATCTAG
GCGTGGAGAGCCAATCCAGGGTCTCATTCAAGTGTGAGCAGTCTTTAGTG
ATTGTGTTAATCAAGATGTGGTAAACCTTTACCAGCATGGTTTTAGCTTA
ATATTTGAAACTCAGTTTGTTTTGTACTATTTTGATGTGTTATTGTATTT
GTGATTTATATTTAAGTTTTCCAAAAAATTGTTTAAGACGTTATGTTTGT
TTTTCCATTTCATCCTGTTTTTTATTCATTTGTGGGTTTCATTTTAAAAT
CGCCTAACCACCAATCCCTGGTCTTTTCACCTAACTCTTTCCGTCTT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAAAATATCATCTCATCT
GGCATTTTCTTTTTTCAGAAGTCACCCATTCCTTTTAAAACAGAAGATCT
ACTGTGTCCCTAACACTAAGACACCCCACAAGAGATAGACCCAGTGGGAA
ACAACAAAACCTGCTTGTGAGAAGTACAACTAAGACGCCACCCAGTAACA
GTCCAAGATGGAAACAAAATGACAAGGTCTGAAAACTTTGGGTACTGAGA
GAGAACCGGGCTCTTAGGGTCCTGAGGACCGGGCCTTCCATTCCTGAGAA
AGAGGCCTTTCAGGTGAGCAACTGAAGCTGCTCTGGAGCAATGCCAAGCA
GACACTTGAATGACAAGTCACTGTCACAAACCCCAAGGCAAAAGCATCTC
CTACAGAGACATCAGCTGGGATGCCTGAAGCAGAAAGAACAGAGGCAGTG
TGGTGCAATGTGAGAACGGAGCACACAAGGCCTGAGCCCCTGTGGGATGA
CTCTCAGAGAACTAGGACTAGTTCTACCTCAAGGCCCAGCTACACCACTA
CCCAATAGATGCTCCACCATCTCACAAAGACACTTGCTCAACTATGTTCA
TAGCAGCTATATGTGTAAGAGCCACACTAGAACACCCTATATGTCCCTCC
ACTGAAGAATGGATAAAGAAATATGGTATGGTTATCCCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_i02.b1 MSMg01no447_i02.b1 CHROMAT_FILE:
MSMg01no447_i02.b1 PHD_FILE: MSMg01no447_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:25 2005
         (567 letters)



>mm_chr1_33839471_33840437
          Length = 967

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagggaaatagcttttccattttatatgaacaagggagcttgattgtgtttgtg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gaattcaagggaaagagcttttccattttatatgaacaagggagcttgattgtgtttgtg 708

                                                                       
Query: 65  agtctaagattttgaacacctggttgtaactgggaccgtctccttgatgctttgctcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agtctaagattttgaacacctggttgtaactgggaccgtctccttgatgctttgctcatt 648

                                                                       
Query: 125 cccactgttgtgttattctgatgatcagtccagtgcacaattctctgaaagagtaaacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cccactgttgtgttattctgatgatcagtccagtgcacaattctctgaaagagtaaacta 588

                                                                       
Query: 185 ggaatttatattatgatgtaggactcagaacaaatgcagctaattctggaacaaaaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggaatttatattatgatgtaggactcagaacaaatgcagctaattctggaacaaaaagat 528

                                                                       
Query: 245 cattccaacgtggaggcaggatgtggaggtctgagaagccaattttgtgtcctataatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cattccaacgtggaggcaggatgtggaggtctgagaagccaattttgtgtcctataatgc 468

                                                                       
Query: 305 actgtaacaaggaatttgacaatgggcaccttctgttgggacatttgaaaaggtaagcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 actgtaacaaggaatttgacaatgggcaccttctgttgggacatttgaaaaggtaagcag 408

                                                                       
Query: 365 ggcactctggattcaaaggttaaaggttagtcatctaggcgtggagagccaatccagggt 424
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 407 ggcactctggattcaaaggttaaaggttagtcatctaggcatggagagccaatccagggt 348

                                                                       
Query: 425 ctcattcaagtgtgagcagtctttagtgattgtgttaatcaagatgtggtaaacctttac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctcattcaagtgtgagcagtctttagtgattgtgttaatcaagatgtggtaaacctttac 288

                                                                       
Query: 485 cagcatggttttagcttaatatttgaaactcagtttgttttgtactattttgatgtgtta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cagcatggttttagcttaatatttgaaactcagtttgttttgtactattttgatgtgtta 228

                                  
Query: 545 ttgtatttgtgatttatatttaa 567
           |||||||||||||||||||||||
Sbjct: 227 ttgtatttgtgatttatatttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no447_i02.g1 MSMg01no447_i02.g1 CHROMAT_FILE:
MSMg01no447_i02.g1 PHD_FILE: MSMg01no447_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:26 2005
         (537 letters)



>mm_chr1_33690682_33691618
          Length = 937

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaaaatatcatctcatctggcattttcttttttcagaagtcacccattccttttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaaatatcatctcatctggcattttcttttttcagaagtcacccattccttttaaaa 260

                                                                       
Query: 61  cagaagatctactgtgtccctaacactaagacaccccacaagagatagacccagtgggaa 120
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cagaagatctactctgtccctaacactaagtcaccccacaagagatagacccagtgggaa 320

                                                                       
Query: 121 acaacaaaacctgcttgtgagaagtacaactaagacgccacccagtaacagtccaagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacaaaacctgcttgtgagaagtacaactaagacgccacccagtaacagtccaagatg 380

                                                                       
Query: 181 gaaacaaaatgacaaggtctgaaaactttgggtactgagagagaaccgggctcttagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaacaaaatgacaaggtctgaaaactttgggtactgagagagaaccgggctcttagggt 440

                                                                       
Query: 241 cctgaggaccgggccttccattcctgagaaagaggcctttcaggtgagcaactgaagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 cctgaggaccgggccttccattcctgagaaagaggcctttcaggtgagcaactgaagttg 500

                                                                       
Query: 301 ctctggagcaatgccaagcagacacttgaatgacaagtcactgtcacaaaccccaaggca 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ctctggagcaatgccaagcagacacttgaatgataagtcactgtcacaaaccccaaggca 560

                                                                       
Query: 361 aaagcatctcctacagagacatcagctgggatgcctgaagcagaaagaacagaggcagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagcatctcctacagagacatcagctgggatgcctgaagcagaaagaacagaggcagtg 620

                                                                       
Query: 421 tggtgcaatgtgagaacggagcacacaaggcctgagcccctgtgggatgactctcagaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgcaatgtgagaacggagcacacaaggcctgagcccctgtgggatgactctcagaga 680

                                                                    
Query: 481 actaggactagttctacctcaaggcccagctacaccactacccaatagatgctccac 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actaggactagttctacctcaaggcccagctacaccactacccaatagatgctccac 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)