AAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATC
CGCGGAATTCTCTTAACATTCCATAGCTTATGTCTATTTCTTACAGTGTG
AGTATTCTGCTTCTATTGATCCTTACCTGTCTGCTCACATTCAAGCATCC
GTTATTTCATTCCCTCTCCAGGGAATCCCTGTGGAATACACAGCTGAATG
CAGATTCTCTGGAAGTAGGAAAGTGGGAAGAGATGGAAACCTCATAGACC
AGTGTGTGCCTTTATATTCTATGTCTGACTTTTGGTCCTCCACTTCAAAA
CCTGATTTTCTTTGGACCTGTTGTTGCTTTTTCAGAGGGCTAAAATCAGT
TTTCCTGGGGAAATATGTTTCTTGTCTGTAGACAGAGTAAAGGAAATAAG
CCATTTGTCAGTTTAGGATGATGGAGAGAGAAATTTCACAGAACATCATG
AAGACCATGACAGTTTTCCCATGTTCACACTGAAGTTCTAGCTTAGTCTT
TATGTTACACACTCACAGAACCTTCATAGCTCTATCAGGCCAAATGTTAT
GGTAATCTCTGGTCAATATGTTCCTTGAAATCTCTGTTTAATTGAACTTT
TTCCTATCCTTTTTAATAACCAGGTTGCATTGTAATTAATTATTACTGCA
TCCTATTAAAATGTTTTAAGTGACTTTAAGTTATTCACTGTTACTAATAG
CCTAATGATGTCAATGGGTTTCTTACTTCTATTGAAGCCCAG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGA
ATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGA
AATTCAAATCAAAACAACCCTGAGATATCACCTCACACCAGTCAGAATGG
CTACGATGAAAAATTCAGGTGGCAGCAGATGCTCGGGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACCACT
CTGGAAAATTGGGCATAGTACTACCGGAGGATCCCGAAATACATCTCCTG
GGCATATATCCAGAAGATGTTCCAAGTGGTAATAAGGTCACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAATGAACCCA
GATGCCCCTCAACAGAGAAATGGATACAGAANATGTGGTACATTTACACA
GTGGAGTAGTACTCAGCTATTAAAAAGAATGAATTTATGTAAATCCTAGG
CAAATGGATGGTCGTGGAGGGCACCCTCCTGAGTGAGCTAAATCCGTCCC
AAAAAAACTCCCCTGATATGGACTTCCTGGATAGGGGGAATAACCCCCAA
AATTAAAAATACCAAGCCTTCTAGAAACATTTGGGAAAACCCTGAACTCT
CCAAAAAAGGAAAAACAAAGAGGGGGAACTTTGTCCCCTTTTTTAATTGG
GGGAAAAAAACCCCGTGGAGGGGTG

Query= MSMg01no447_i21.b1 MSMg01no447_i21.b1 CHROMAT_FILE:
MSMg01no447_i21.b1 PHD_FILE: MSMg01no447_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:29 2005
         (653 letters)



>mm_chr1_3613711_3614763
          Length = 1053

 Score = 1207 bits (624), Expect = 0.0
 Identities = 643/652 (98%), Gaps = 6/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatgtctatttcttacagtgtgagtattctgcttctattgatccttacctgtctgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttatgtctatttcttacagtgtgagtattctgcttctattgatccttacctgtctgctc 260

                                                                       
Query: 61  acattcaagcatccgttatttcattccctctccagggaatccctgtggaatacacagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattcaagcatccgttatttcattccctctccagggaatccctgtggaatacacagctg 320

                                                                       
Query: 121 aatgcagattctctggaagtaggaaagtgggaagagatggaaacctcatagaccagtgtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aatgcagattctctggaagtaggaaagtgggaagagatggaaacctcacagaccagtgtg 380

                                                                       
Query: 181 tgcctttatattctatgtctgacttttggtcctccacttcaaaacctgattttctttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctttatattctatgtctgacttttggtcctccacttcaaaacctgattttctttgga 440

                                                                       
Query: 241 cctgttgttgcttt---ttcagagggctaaaatcagttttcctggggaaatatgtttctt 297
           ||||||||||   |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgttgttg---taggttcagagggctaaaatcagttttcctggggaaatatgtttctt 497

                                                                       
Query: 298 gtctgtagacagagtaaaggaaataagccatttgtcagtttaggatgatggagagagaaa 357
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtctgtagacagagtaaagaaaataagccatttgtcagtttaggatgatggagagagaaa 557

                                                                       
Query: 358 tttcacagaacatcatgaagaccatgacagttttcccatgttcacactgaagttctagct 417
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 tttcacagaacatcatgaagaccatgccagttttcccatgttcacactgaagttctagct 617

                                                                       
Query: 418 tagtctttatgttacacactcacagaaccttcatagctctatcaggccaaatgttatggt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagtctttatgttacacactcacagaaccttcatagctctatcaggccaaatgttatggt 677

                                                                       
Query: 478 aatctctggtcaatatgttccttgaaatctctgtttaattgaactttttcctatcctttt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aatctctggtcaatatgttccttgaaatctctgtttaattgaactttttcctatcctttt 737

                                                                       
Query: 538 taataaccaggttgcattgtaattaattattactgcatcctattaaaatgttttaagtga 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taataaccaggttgcattgtaattaattattactgcatcctattaaaatgttttaagtga 797

                                                               
Query: 598 ctttaagttattcactgttactaatagcctaatgatgtcaatgggtttctta 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctttaagttattcactgttactaatagcctaatgatgtcaatgggtttctta 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)