BAC Information

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BAC

Clone NameMSMg01-447J14
Chromosome1 (Build37)
Map Location 170,207,507 - 170,373,510
singlet/doubletdoublet
Overlap genePbx1
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447J14.T7 (MSMg01no447_j14.b1)MSMg01-447J14.TJ (MSMg01no447_j14.g1)
ACCAG536014AG536015
length757767
length of high quality
(start - end)		557 (48 - 604)472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no447_j14.b1 PHD_FILE: MSMg01no447_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:33 2005CHROMAT_FILE: MSMg01no447_j14.g1 PHD_FILE: MSMg01no447_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,372,957 - 170,373,510)(170,207,507 - 170,207,978)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGGTGTGTGCTGATTAAAATAGAGTTTGTAGCAGTGAAACTT
TGGGCATCACTTCAGAAAACGCGAGATTACTTTCTTCATATACTAAGTCT
AGAATTAGATGCTCAAGGATTGATATGCTTTCCAAGGGAATGGCCACAAA
GTCAAAGCATTTCATTGCCATTTCTATCTGTAACAATCCTTTTTATCCCC
ACGGTGCAAAGATGACTCTGTTATCACCAGACATTACATCCTTATTACTC
CATCCCAGCCAGTAATAAGAATGTAAAGGGAATGGACATCAGTGTTCTGT
CTGTCTGCTTCTGAGCTATGAAACAACAACAACACACAGCCCCCATCCCA
CAAGCCCTACACAAGAAACTTCTTTTTGTTCAGAATTATGACAGATGACC
ACGCACGCATGCACAATAGTCTGGGATATTAAGTGATTTAGCCCAGGTAC
ATTGGAGTCAGAATAAATTGTGATTTGTAGGAAAGAATGAATGTTATGGG
TACAGAACTAGCTGAGCCTGCCAGTCAATTTTCCAATGAAATACAGGGAG
TAGCGTATGTCTGTATGTACTATAGCTTATTGATCATTTTGATATAGAGG
TACTAACTAAGAAAGATACATAGGCTAAAGAATTCCCAGGGCGGGGGAAT
CTCCTTGAGGACAGAGGTTAGCATACCACCCCCGGTGTCCTTACTCTACC
AGCACAC

CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTCAATGAGAGATCCTGTCT
CAAGGAAATAAAGTGGCCACTGATAAAGCAGGATGCCTGGGATATTCTTC
TCCCTCTTCCACAGCTGTTTGTATTTGCACACACACACTCACACACACAC
ACAAACACACACACACACACACAAACACACACGAACACAATGCAGAATCC
TCTGTAGATTGATATACTCCTTCCAACAAATAGAACTGCAGCACTTCCTC
CCAGTTACTTGTGGCAAAACAATTTGTAGAAGGAAAAGGCTGGAATTTAG
ACATTCCATTTAGCTACTGAAGAAATCTAAGGACCTTGAACCTTGTGGGA
TTTCAGATCGATGGAATTAATTAAGGGAGATGTCCAGTGCCCTCCACTAA
GTAATCAGCAGGTACAGTAGACCCAAATGTCTATAAGGAAAAATGGGATG
GGATGACATTGAGGGAGGCAGAGGAATTAAAAAATGATCATCCGAATGGG
AAAAGCACACAGCCCATTGATTGAGGCATACGAGATTAAGGCTTGGGTGA
GCGGCTAGAAAGTTCTGTAACAGGAATGGCTACAGAGCAAGAAGCTAAAC
CTTGCCACCTCTATAACGGGGGCAGGAAAGCTCAACTCGAAAGGGAATAC
TATCCCTCAAGCCTGAAATTGAAAAAGTCCCAAAAAAAATTAAAAAATAA
AAAAACCTGTATAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_j14.b1 MSMg01no447_j14.b1 CHROMAT_FILE:
MSMg01no447_j14.b1 PHD_FILE: MSMg01no447_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:33 2005
         (557 letters)



>mm_chr1_170372754_170373710
          Length = 957

 Score = 1071 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagggtgtgtgctgattaaaatagagtttgtagcagtgaaactttgggcatcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggaattcagggtgtgtgctgattaaaatagagtttgtagcagtgaaactttgggcatcac 698

                                                                       
Query: 64  ttcagaaaacgcgagattactttcttcatatactaagtctagaattagatgctcaaggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttcagaaaacgcgagattactttcttcatatactaagtctagaattagatgctcaaggat 638

                                                                       
Query: 124 tgatatgctttccaagggaatggccacaaagtcaaagcatttcattgccatttctatctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgatatgctttccaagggaatggccacaaagtcaaagcatttcattgccatttctatctg 578

                                                                       
Query: 184 taacaatcctttttatccccacggtgcaaagatgactctgttatcaccagacattacatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 taacaatcctttttatccccacggtgcaaagatgactctgttatcaccagacattacatc 518

                                                                       
Query: 244 cttattactccatcccagccagtaataagaatgtaaagggaatggacatcagtgttctgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttattactccatcccagccagtaataagaatgtaaagggaatggacatcagtgttctgt 458

                                                                       
Query: 304 ctgtctgcttctgagctatgaaacaacaacaacacacagcccccatcccacaagccctac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctgtctgcttctgagctatgaaacaacaacaacacacagcccccatcccacaagccctac 398

                                                                       
Query: 364 acaagaaacttctttttgttcagaattatgacagatgaccacgcacgcatgcacaatagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acaagaaacttctttttgttcagaattatgacagatgaccacgcacgcatgcacaatagt 338

                                                                       
Query: 424 ctgggatattaagtgatttagcccaggtacattggagtcagaataaattgtgatttgtag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgggatattaagtgatttagcccaggtacattggagtcagaataaattgtgatttgtag 278

                                                                       
Query: 484 gaaagaatgaatgttatgggtacagaactagctgagcctgccagtcaattttccaatgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaaagaatgaatgttatgggtacagaactagctgagcctgccagtcaattttccaatgaa 218

                         
Query: 544 atacagggagtagc 557
           ||||||||||||||
Sbjct: 217 atacagggagtagc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_j14.g1 MSMg01no447_j14.g1 CHROMAT_FILE:
MSMg01no447_j14.g1 PHD_FILE: MSMg01no447_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:33 2005
         (472 letters)



>mm_chr1_170207307_170208178
          Length = 872

 Score =  905 bits (468), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggctcaatgagagatcctgtctcaaggaaataaagtggccactgataaagcaggatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctcaatgagagatcctgtctcaaggaaataaagtggccactgataaagcaggatgc 260

                                                                       
Query: 61  ctgggatattcttctccctcttccacagctgtttgtatttgcacacacacactcacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggatattcttctccctcttccacagctgtttgtatttgcacacacacactcacacac 320

                                                                       
Query: 121 acacacaaacacacacacacacacacaaacacacacgaacacaatgcagaatcctctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacaaacacacacacacacacacaaacacacacgaacacaatgcagaatcctctgta 380

                                                                       
Query: 181 gattgatatactccttccaacaaatagaactgcagcacttcctcccagttacttgtggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgatatactccttccaacaaatagaactgcagcacttcctcccagttacttgtggca 440

                                                                       
Query: 241 aaacaatttgtagaaggaaaaggctggaatttagacattccatttagctactgaagaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaatttgtagaaggaaaaggctggaatttagacattccatttagctactgaagaaat 500

                                                                       
Query: 301 ctaaggaccttgaaccttgtgggatttcagatcgatggaattaattaagggagatgtcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaggaccttgaaccttgtgggatttcagatcgatggaattaattaagggagatgtcca 560

                                                                       
Query: 361 gtgccctccactaagtaatcagcaggtacagtagacccaaatgtctataaggaaaaatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgccctccactaagtaatcagcaggtacagtagacccaaatgtctataaggaaaaatgg 620

                                                               
Query: 421 gatgggatgacattgagggaggcagaggaattaaaaaatgatcatccgaatg 472
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 gatgggatgacattgagggaggcagaggaattaaaaaatgagcatccgaatg 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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