BAC Information

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BAC

Clone NameMSMg01-447J21
Chromosome1 (Build37)
Map Location 179,457,124 - 179,457,508
singlet/doubletsinglet
Overlap genenone
Upstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238
Downstream geneEG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447J21.T7 (MSMg01no447_j21.b1)MSMg01-447J21.TJ (MSMg01no447_j21.g1)
ACCAG536027AG536028
length750798
length of high quality
(start - end)
465 (75 - 539)350 (83 - 432)
definitionCHROMAT_FILE: MSMg01no447_j21.b1 PHD_FILE: MSMg01no447_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:34 2005CHROMAT_FILE: MSMg01no447_j21.g1 PHD_FILE: MSMg01no447_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAAATATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGATTATTTCGGGCTAGTGAGACCCTGTCTCAAACAAA
CAAACAAAGTGAATCTTTTAAGGATGTTCATTTTATTTTGTCTATTTTTG
TTTGTGAATGGGTAATGGGTGTGTATATGTGTACCTTTGTGTCTCCCACA
GCACAGGTGTGAAGGTTGGAGGAGAATTTCACATCTGTCCTGGGTATCTT
TGCTGTGTTTGTTTGTTTGTTTGTTTGTTTTTCTGAATGTGATAGTCCAG
ATAGCCCCAGAGTGGGGACTCTCCTCTCTCCATCTCGTACTTCTTTATAG
GAGGGCTTGGATTTCAGATGTCTCTCTCCATGTCCACCTTTCTCTCTGGA
TTCTGGGGATCCCGGGTCATGCTCTCAATGCTTGTACAGTATACTTTTTC
CCTACTGAGCCATCCATCCCAGGACAAGCATGATATTTAAAGACACGTGT
TGACTTATAATGAGAACAGTACATCAGTTCCTTCCTTTTTTAAAAATTTC
TAATTACAATTTTCTGGAAGAATTAACATGAGGCTGTTGAATGAAGAATA
TATTCAGAGTAGAGGGAGCTTGGATGATTTTGAATATTCATTTTAATCTT
TTTCCCCCCCTTCTGTGTTTTAAAAATCGGGCATCAACTTAAATATTTTC
TTACCCCTCGGACCCTTGCCCATTTTTTTTACTATATATTATTACTTATA

ATTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGAAACATATAGAT
TTCTTTTTATGTTTCTTTCTCTTTTCTTTTTTTTTTTTTTTTAAGTATTT
CATTCATCTAGAATACTGGTAGGCACATGAGGTGGCTCAAGCCTTTAATC
CCAGCCCTTGGGAGGCAGAGGCTGGCAGATCTGTGTGAGTTCAAGGCCAG
CTTAGTCTACATGTGAGTTCCAGAACAGTAAGGACCATCTAATGCAGAGA
CCCTGTCTCAAACAGCCAAATCAAACTACAACAAACACCACCTGTAAACT
CCCAAAATGTCTAAACAAATTGAGAGTGGGTCTTTCTTCTGGGAAGCACG
TGGGGGTAAGAAATTCGGGTTGAATCTGAGGATGCCCCTGGAGGCCGNCC
TTTCCCTCCTCCTCGCCCCCTTTTTTTTGTGGCGATTTTCTTCTTTTGCC
TTTCTCCTTTTTTTCTCTTGTTTCGTCTTCCCTCGCTTCTCTCTTCCTTT
CTTGTTTTGTTTTTCTCTTGTTCTTTCTTTCTGTTTCTTTTTCTTTCCTT
TTTTTTCCCCCCGTTCGCTCTCTTTTTTTTTTTTCCGTTTTTCCCCTCTT
TCTCTCCTTCCTTTCTTCTTTTTCTTCCCTACTTCTCTTTCTTTCTTACC
AGTCTTTTCTTTCTCTTCACCACTTTCTCCTCTCTTATTTTCTTCTTGCT
AACTATTCGTGTCTTTCACTACTCCCTTACGCGGTTCTTTACTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_j21.b1 MSMg01no447_j21.b1 CHROMAT_FILE:
MSMg01no447_j21.b1 PHD_FILE: MSMg01no447_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:34 2005
         (465 letters)



>mm_chr1_179457124_179457992
          Length = 869

 Score =  621 bits (321), Expect = 0.0
 Identities = 364/385 (94%), Gaps = 12/385 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctagtgagaccctgtct----caaacaaacaaacaaagtgaatcttttaaggatgttca 56
           ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctagtgagaccctgtctcaaacaaacaaacaaacaaagtgaatcttttaaggatgttca 326

                                                                       
Query: 57  ttttattttgtctatttttgtttgtgaatgggtaatgggtgtgtatatgtgtacctttgt 116
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ttttattttgtctatttttgtttgtgaatgggtaatgggtgtgtatgtgtgtacctttgt 266

                                                                       
Query: 117 gtctcccacagcacaggtgtgaaggttggaggagaatttcacatctgtcctgggtatctt 176
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtctcccacagcacaggtatgaaggttggaggagaatttcacatctgtcctgggtatctt 206

                                                                       
Query: 177 tgctgt--------gtttgtttgtttgtttgtttgtttttctgaatgtgatagtccagat 228
           ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgctgtttttgtttgtttgtttgtttgtttgtttgtttttctgaatgtgatagtccagat 146

                                                                       
Query: 229 agccccagagtggggactctcctctctccatctcgtacttctttataggagggcttggat 288
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 145 agccccagagtggggactctcctctctccatctcgtacttccccataggagggcttggat 86

                                                                       
Query: 289 ttcagatgtctctctccatgtccacctttctctctggattctggggatcccgggtcatgc 348
           ||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 85  ttcagatgtctctctccacatccacctttctctctggattctggggatcccaggtcatgc 26

                                    
Query: 349 tctcaatgcttgtacagtatacttt 373
           ||||||||||||||||||| |||||
Sbjct: 25  tctcaatgcttgtacagtacacttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 869
Length adjustment: 10
Effective length of query: 455
Effective length of database: 859
Effective search space:   390845
Effective search space used:   390845
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)