BAC Information

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BAC

Clone NameMSMg01-447K04
Chromosome1 (Build37)
Map Location 58,184,168 - 58,326,626
singlet/doubletdoublet
Overlap geneAox3, Aox4
Upstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1
Downstream geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447K04.T7 (MSMg01no447_k04.b1)MSMg01-447K04.TJ (MSMg01no447_k04.g1)
ACCAG536041AG536042
length793789
length of high quality
(start - end)
239 (77 - 315)217 (85 - 301)
definitionCHROMAT_FILE: MSMg01no447_k04.b1 PHD_FILE: MSMg01no447_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:36 2005CHROMAT_FILE: MSMg01no447_k04.g1 PHD_FILE: MSMg01no447_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,326,381 - 58,326,626)(58,184,168 - 58,184,380)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCGTTAATGTGTACCGCAACTGAAATCCAATCAGGAATGCATGTTGTG
CAGTGAGACTATTTTTTTTAGTTGTCCTGACATCATGAGTTTGTGGGTTA
GGTTCTAGGAAACGTAGATTATTGGGGGGAATTAAAAGATTGAATTAAAC
ATTTAGAGGCACATATTTTCATCCTCACTTTGGAGTAGGACACAGTAAGC
TTTCTCCTGCTGGTCTCTGCTCCCTATTCTGGTGTGTGATGTACTCAGGC
AACCTGGACGTGGAGCTGGTTTTTTTTTTCCACCCTGGGCTCTTGTAGTG
GCTGAGAGCATTTTCTGCACACAAGTCCCCGACAGTACAGAGTCCTGCTC
CCCCATCTATTCTGGTTCGAATATTGCTTATCTTCCCAGGTGTGTGCTGT
AAGTCTGTCTCCCCACGTGTTATTGTTGTTATTGTCTTATGTGTTCGTCG
CTGTTTTTGCCTTTTTCTTTACCCCTTCACCTTTTCTTTCAACTTTTCCT
AGTCTTTTTTTCCCCTTTTTTTTCCTTTACTCTTCCCCTCCCAATTTTTC
TCCCCCCCTCTTTTTTCCTTTTTTTTTTCCTCCTTTTTTTTTTTTTTTTT
TATTTTCTTTTTTACTCTCCATTTTTTTTTCCTCTACCTTTTTTTTATAC
GCTGTTTTCCTTACATTTATTATTTATCCCCCATCACCCATTTTTGTTCT
CTATTCTCCTTTTCTCTTCCCCCCACTTCTTTCCTCTTCATTT
NGCACGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTGTTTCATCTAGC
AAGGGGTCTTTTGCTGTGTTCTACCTTGACAAAAGGCAATGATGGAAGAG
ACTTGGGGGTAAAGGGAAGCCAAAGGGGTCCAAGTTTGTCCTTTAAATAT
TAATCTTCCCTGGCTGCCCTGGCATTCGTCCATTCTTGGGTGAGAACTCC
CTCTAAGACAATCACCATCAGTATGAGCTCCAGAGGACGTGCACTGACAG
CATCTCGTACGATCATGATAGCTGTCCTCACCTCTGGATTCTCACAACTC
CGTGCCTCTCTGATTTCACTGTTAACGTTTTCCACAGAGCTCAACTTGCT
GCCAGATGAATGTTTAATCTATTTGTTGTTCGTACGACTATATTCACTAT
CCCGACACTTCTTTCCTTGCGAGTTTCCCTATTTCTTCCTCATTTCCTTC
ATCCCTCCTTAATCTGGACACTTCGCTTTATTCCCTCCCTCCCTCCTATA
CCCCTCCTTTTACCCTATCTCCCCTCATTTTTTCTATCTATTCTTTTCTT
ACTTTCTATTCTCATCCCTTTCTTCCATCCTTTTCTGTTTCTCCTCCTCC
TTCCTTCTTTCCTCTCCATTTTTGTTTACTTTATATCTCCTTATCCTTAT
CTGCTTCTCCCCTCTTCCACCCTTTCTTTTTCTTTCTCCCTCCTTTTTCA
TTCTCTCCTCTTTCTTTCACCCTTCCTGTTTCTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_k04.b1 MSMg01no447_k04.b1 CHROMAT_FILE:
MSMg01no447_k04.b1 PHD_FILE: MSMg01no447_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:36 2005
         (239 letters)



>mm_chr1_58326181_58326826
          Length = 646

 Score =  418 bits (216), Expect = e-121
 Identities = 237/246 (96%), Gaps = 7/246 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccaatcaggaatgcatgttgtgcagtgagacta-ttttttttagttgtcctgacatca 59
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 446 atccaatcaggaatgcatgttgtgcagtgagactatttttttttaattgtcctgacatca 387

                                                                       
Query: 60  tgagtttgtgggttaggttctaggaaacgtagattatt-ggggggaattaaaagattgaa 118
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 tgagtttgtgggttaggttctaggaaacgtagattattgggggggaattaaaagattgaa 327

                                                                       
Query: 119 ttaaacatttagaggcacatattttcatcctcactttggagtaggacacagtaag-cttt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 326 ttaaacatttagaggcacatattttcatcctcactttggagtaggacacagtaagacttt 267

                                                                       
Query: 178 ctcctgctggtctctgctccctattctggt----gtgtgatgtactcaggcaacctggac 233
           ||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||
Sbjct: 266 ctcctgctggtctctgctccctattctggtgtgagtgtgatatactcaggcaacctggac 207

                 
Query: 234 gtggag 239
           ||||||
Sbjct: 206 gtggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 646
Length adjustment: 9
Effective length of query: 230
Effective length of database: 637
Effective search space:   146510
Effective search space used:   146510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no447_k04.g1 MSMg01no447_k04.g1 CHROMAT_FILE:
MSMg01no447_k04.g1 PHD_FILE: MSMg01no447_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:36 2005
         (217 letters)



>mm_chr1_58183968_58184584
          Length = 617

 Score =  412 bits (213), Expect = e-120
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgtttcatctagcaaggggtcttttgctgtgttctaccttgacaaaaggcaatgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgtttcatctagcaaggggtcttttgctgtgttctaccttgacaaaaggcaatgatg 260

                                                                       
Query: 61  gaagagacttgggggtaaagggaagccaaaggggtccaagtttgtcctttaaatattaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagacttgggggtaaagggaagccaaaggggtccaagtttgtcctttaaatattaat 320

                                                                       
Query: 121 cttccctggctgccctggcattcgtccattcttgggtgagaactccctctaagacaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccctggctgccctggcattcgtccattcttgggtgagaactccctctaagacaatca 380

                                            
Query: 181 ccatcagtatgagctccagaggacgtgcactga 213
           |||||||||||||||||||||||||||||||||
Sbjct: 381 ccatcagtatgagctccagaggacgtgcactga 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)