Query= MSMg01no447_k13.b1 MSMg01no447_k13.b1 CHROMAT_FILE:
MSMg01no447_k13.b1 PHD_FILE: MSMg01no447_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:38 2005
(300 letters)
>mm_chr1_30857682_30858381
Length = 700
Score = 545 bits (282), Expect = e-160
Identities = 295/300 (98%), Gaps = 2/300 (0%)
Strand = Plus / Plus
Query: 3 ggaattcaacatcactccactttcttctgtactgctggcatttacaatgatctcattctg 62
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaacatcactccactttcttttgtactgctggcatttacaatgatctcattctg 262
Query: 63 tatttccagaaggctaacaatccaactttacaatgtagaagcccaacctcaaagacatct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatttccagaaggctaacaatccaactttacaatgtagaagcccaacctcaaagacatct 322
Query: 123 acctacatcttaatccttgcaagacctgagaatgtcaggttgcatagcaaagaaatgagg 182
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 323 acctacatcttaatccttgcaagacctgagaatgtcaggttgcgtagcagagaaatgagg 382
Query: 183 tcacagatgacacccatttagctgactttcagatatgaagacacccaagtggctgggttc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcacagatgacacccatttagctgactttcagatatgaagacacccaagtggctgggttc 442
Query: 243 acctctgacaggtgttttaattgaagggtaagacccattttggggggggggg--ggagat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 443 acctctgacaggtgttttaattgaagggtaagacccattttgggggggggggagggagat 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_k13.g1 MSMg01no447_k13.g1 CHROMAT_FILE:
MSMg01no447_k13.g1 PHD_FILE: MSMg01no447_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:38 2005
(480 letters)
>mm_chr1_30995053_30995932
Length = 880
Score = 605 bits (313), Expect = e-177
Identities = 343/353 (97%), Gaps = 2/353 (0%)
Strand = Plus / Minus
Query: 1 acccctttccccagggctctccccagcccacc-cccacccccttattttgttcccaacaa 59
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 352 acccctttccccagggctctccccagcccaccaccc-cccccttattttgttcccaacaa 294
Query: 60 aagaacttaaaggtccttctaaaacagtgatggccagtcttggtcatcaacagccacctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aagaacttaaaggtccttctaaaacagtgatggccagtcttggtcatcaacagccacctg 234
Query: 120 caggagggaccctcaactaagaattgttcagagagctgggcgtggtggctcacgccttta 179
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 233 caggagggaccctcaactaagaattgttcagagagctggccgtggtggcgcacgccttta 174
Query: 180 atcccagcacttgggaggcagaggtaggcgaatttctgagttcaaggccagcctggtcta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atcccagcacttgggaggcagaggtaggcgaatttctgagttcaaggccagcctggtcta 114
Query: 240 cagagtgagttccaggacagccagggctatacagagaaaccctgtctcgaaaaaccaaga 299
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 113 caaagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaacaaga 54
Query: 300 aaaaagaaaattgcccagatcagatgggctttcggtcctatctgtggggtact 352
||||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct: 53 aaaaagaaaattgtccagatcagatgggcttttggtcctctctgtggggtact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
