Query= MSMg01no447_k23.b1 MSMg01no447_k23.b1 CHROMAT_FILE:
MSMg01no447_k23.b1 PHD_FILE: MSMg01no447_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:39 2005
(551 letters)
>mm_chr1_84688052_84689008
Length = 957
Score = 1007 bits (521), Expect = 0.0
Identities = 543/553 (98%), Gaps = 6/553 (1%)
Strand = Plus / Minus
Query: 5 gaattctcatctgcttcccactggggtagccaccaaagctagggattatttgtttgcaag 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattctcatctgctttctactggggtagccaccaaagctagggattatttgtttgcaag 698
Query: 65 gtttattttattttaatgaaagaatcctttgccaaatatgcaagcagttagacacctg-- 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtttattttattttaatgaaagaatcctttgccaaatatgcaagcagttagacacctgtt 638
Query: 123 --tattttttgttgttgttg--tttttttttttaaaatcacacattccctaaggaactta 178
| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 637 ttttttttttgttgttgttgttttttttttttttaaatcacacattccctaaggaactta 578
Query: 179 tcctctgaaatgaaaacagaaatgtatcaatttctgcacttggagaaatagggggacatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcctctgaaatgaaaacagaaatgtatcaatttctgcacttggagaaatagggggacatg 518
Query: 239 taatagccactttttatttaagttaatggtactcattaagctgattctagaatctcctct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 taatagccactttttatttaagttaatggtactcattaagctgattctagaatctcctct 458
Query: 299 tccgatcaagcatgctaattcaaaacaatatttcagatgaacaaatccgcttctgactga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tccgatcaagcatgctaattcaaaacaatatttcagatgaacaaatccgcttctgactga 398
Query: 359 gaatatttttggtgttgctgaggatggaaacagtcttgcaaatttgctataactaaaggg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaatatttttggtgttgctgaggatggaaacagtcttgcaaatttgctataactaaaggg 338
Query: 419 tctgattctttgcatttcatcagtccttttactggacttttaaacacacaagcacacaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tctgattctttgcatttcatcagtccttttactggacttttaaacacacaagcacacaca 278
Query: 479 acttgcacattcgagaggcaaagagagcgcgcatgagcttttattgtgccctttactgtg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acttgcacattcgagaggcaaagagagcgcgcatgagcttttattgtgccctttactgtg 218
Query: 539 gtatctgcaaact 551
|||||||||||||
Sbjct: 217 gtatctgcaaact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 957
Length adjustment: 10
Effective length of query: 541
Effective length of database: 947
Effective search space: 512327
Effective search space used: 512327
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_k23.g1 MSMg01no447_k23.g1 CHROMAT_FILE:
MSMg01no447_k23.g1 PHD_FILE: MSMg01no447_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:40 2005
(407 letters)
>mm_chr1_84509687_84510493
Length = 807
Score = 764 bits (395), Expect = 0.0
Identities = 404/407 (99%)
Strand = Plus / Plus
Query: 1 tcctgaactgactcagattcctgtctgctctgaaggtcacattcctgcctgccctctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgaactgactcagattcctgtctgctctgaaggtcacattcctgcctgccctctctg 260
Query: 61 aatgtgtggaactggtcttctgctgaggaatggagctcaaggccactgatgtcacccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgtggaactggtcttctgctgaggaatggagctcaaggccactgatgtcacccatg 320
Query: 121 cggcatctccagaaatgctcagacaccatcagccttcctaagcacaaggctaggacctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggcatctccagaaatgctcagacaccatcagccttcctaagcacaaggctaggacctgc 380
Query: 181 tgacaagtctctcaaacccccacaccccagaacaggtctctatcctcctaggcagccctg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tgacaagtctctcaaacccccacaccccagcacaggtctctatcctcctaggcagccctg 440
Query: 241 acaggctgtacctgcctcctcgaatgccctgctctcctactaaaatcagtccctaatcac 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggctgcacctgcctcctcgaatgccctgctctcctactaaaatcagtccctaatcac 500
Query: 301 acagttattctgattttaaggatagatgacacccttctgtgttactatttcagggacatt 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 acagttattctgattttaaggatagatgacaccctactgtgttactatttcagggacatt 560
Query: 361 tgcatttaaatagaaaactgtgcctttattacaaaggaattaagctt 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcatttaaatagaaaactgtgcctttattacaaaggaattaagctt 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
