BAC Information

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BAC

Clone NameMSMg01-448A08
Chromosome1 (Build37)
Map Location 69,443,409 - 69,443,837
singlet/doubletsinglet
Overlap genenone
Upstream geneErbb4, LOC667842, EG241084
Downstream geneIkzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448A08.T7 (MSMg01no448_a08.b1)MSMg01-448A08.TJ (MSMg01no448_a08.g1)
ACCAG536333AG536334
length275748
length of high quality
(start - end)
---429 (84 - 512)
definitionCHROMAT_FILE: MSMg01no448_a08.b1 PHD_FILE: MSMg01no448_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:07 2005CHROMAT_FILE: MSMg01no448_a08.g1 PHD_FILE: MSMg01no448_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTCTTTTTCAAAAAAAAAAAAAGAATTACCGAGCCCTTTCCCGGAC
TAGATAACAGAGTCCTCTTCCCTCTCCAACCTTATTCTCCTTTCCCTTAT
CATAACCTCTGGTGTCAGATGCTAAACTCCAGAAATTCTGTCATAGGTTA
CGTAAATACGACTTGAGGCACATTGGGAGATTCCTATCGCGCTAGATCAT
AGTCCTCAGGATATGGCTCATGATTAGTGGGCGTATAGCGACCATTGCTA
GAGTGACACTAAAATGGATGAATCC
NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACCCTAGAGAAGCC
AACTGTATATGATGTGTTCACCCAATAAGAGTCAATTATAAGAAATGGAA
ATATTAATATGTCTAGACACAGTAGCACAGAGAACTGATGATCTATGAGG
AAGGCAGTAAAGGACCAATTACAGTTTGCCAGGCAAACAAAAGGAAAGTA
AAGGCACACATGTAGACACACATGTATCAGGCTTCAGTAGGGGGGTGGTC
AATAATTTCCTGATATGGTAAAGATTTTTATGAGGACAGTAAAGATCCAT
GGATACATGGCTGTATGGCAAGGTCAGTGATAAAGTAAGCTAAAGAAGTA
CCTCCCCTTTTAAGTTGTATAGTTGTTTTCACCAAGTTGGAAAGCTTGAC
AAGAAAAAGATTAGAATATTACATCCATGGGCCTAATCTTGTGCAGATAT
CATGTGGGTAACCCTGAGTGTTATATGTTAATAGGCTACTACGGATTTCA
TATTCAGGTCACTTTGTTATTGTATACCATAACTTTTCCATCCTCCACTT
TTAATTTTTGCTATAATATGTTTTCTTTTTCACGTTTTATTCTATGCTCT
CGGGTTGTTTCTTTACCATAGCTTCCGTTTTGTTCTCTTCTGTTTCTGTT
CACCTCCTGGCTATTTCTTCTCACTGGTATAGCCCTCCTTTTAGCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_a08.g1 MSMg01no448_a08.g1 CHROMAT_FILE:
MSMg01no448_a08.g1 PHD_FILE: MSMg01no448_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:07 2005
         (429 letters)



>mm_chr1_69443209_69444037
          Length = 829

 Score =  793 bits (410), Expect = 0.0
 Identities = 424/434 (97%), Gaps = 10/434 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaccctagagaagccaactgtatatgatgtgttcacccaataagagtcaattataaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 attaccctagagaagccaactgtatatgatgtgttcacccaataagagtcaattataaga 570

                                                                       
Query: 61  aatggaaatattaatatgtctagacacagtagcacagagaactgatgatctatgaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aatggaaatattaatatgtctagacacagtagcacagagaactgatgatctatgaggaag 510

                                                                       
Query: 121 gcagtaaaggaccaattacagtttgccaggcaaacaaaaggaaagtaaaggcacacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gcagtaaaggaccaattacagtttgccaggcaaacaaaaggaaagtaaaggcacacatgt 450

                                                                       
Query: 181 agacacacatgtatcaggcttcagtaggggggtggtcaataatttcctgatatggtaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agacacacatgtatcaggcttcagtaggggggtggtcaataatttcctgatatggtaaag 390

                                                                       
Query: 241 a-----tttttatgaggacagtaaagatccatggatacatggctgtatggcaaggtcagt 295
           |          |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaaaag-----atgaggacagtaaagatccatggatacatggctgtatggcaaggtcagt 335

                                                                       
Query: 296 gataaagtaagctaaagaagtacctccccttttaagttgtatagttgttttcaccaagtt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gataaagtaagctaaagaagtacctccccttttaagttgtatagttgttttcaccaagtt 275

                                                                       
Query: 356 ggaaagcttgacaagaaaaagattagaatattacatccatgggcctaatcttgtgcagat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggaaagcttgacaagaaaaagattagaatattacatccatgggcctaatcttgtgcagat 215

                         
Query: 416 atcatgtgggtaac 429
           ||||||||||||||
Sbjct: 214 atcatgtgggtaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)