BAC Information

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BAC

Clone NameMSMg01-448C15
Chromosome1 (Build37)
Map Location 11,094,733 - 11,095,219
singlet/doubletsinglet
Overlap genenone
Upstream geneCspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448C15.T7 (MSMg01no448_c15.b1)MSMg01-448C15.TJ (MSMg01no448_c15.g1)
ACCAG536443AG536444
length1,151773
length of high quality
(start - end)		---487 (78 - 564)
definitionCHROMAT_FILE: MSMg01no448_c15.b1 PHD_FILE: MSMg01no448_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:20 2005CHROMAT_FILE: MSMg01no448_c15.g1 PHD_FILE: MSMg01no448_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATTGCTTTTCTACACTCGTTCACATTTATCCCCTATATGTACACGAC
TTCTGTCATCTCAAACACAATGCGGCTGAAGGCGTACGGGGGTATAAGTC
GGAGTTGTACATGAAACCACGTATGTAAATGGTTTCCAACATATCGAGCG
ATCATCACTCACTAAGATGTCGAAAAAAGGAGGCAGAAAAGCAATAGGGA
AGAGCGTGGGCCTTTGTAACCCAATCGTCCGAAAAGTGGCCGATATTTAT
AGATCCGTCCCCACAATCTACCAACACATGTACCCAATTTCCTTTTACAA
TTCAAACGCCCCACGATGTTTACACTGTTATATGTCAATCGTCGCGATGA
TAACTGTTCGCAAGACACTTCTCCAAGTGTTCGCGTGTTTTTTTGCGCCG
TATGATATATTCCCCCTTAGTGTTTTCGAGGGTTTTTGCGTAAGTCTTGC
GTGTTTTCATACACGCCGTTATGTGTGTTTCGCGCTTCGCGTCCGCCCCA
TGTTACCGGCCTAGGTACACGCGTTGCTTTTTTTGCCGCCAGTATTATTT
TCCCGCACCCGTGTCTATAATGTGTTGGAATTGGATAGATGTGCTTCTTG
ATATTCGGGCCGCATAATTGTTACGCTGCGAGGACTAGTAGCCAGTCGCA
GTTGGGACCCATTTCGGTTTGCACCAACGACATTTCCAGTGTTCACATTT
TTACACCCGCTTCCCCACTAACGCGTTCGTATTTTCTCTATATACCCCCG
CGCCCTTCATTTTGCCGTTATCCTACCTTATATCCCTACGTTCGCGTCTT
GCCGCGCGCGATTATTCCCATTTCCCTTCTTTTCCGTTTTATCGCTTCCC
TCCGCTACTTTTTAACATTCTAGACGGCGCGAATACGCGTCGCGAAGGTT
GCGTAAAATATTTTCCTCGCCCCCGACAGAATTAAAAGAATCGCCATAAT
ACTTTACGCTCCATGGAAAAACGCCACATATCTTTTATCTAAATCCGAGC
CTCGGGGAGAGAGCCGTAATTACGGCTGTCGTTATGGGCGCTCTTGTCCA
CTGTCCGCTAGGAGAGGGATTACGTTATTCTCACCGCCTGTATGAGTGTC
TCGGTTTCGACGTCATACACACGAACAATATTATAATAGCGACCAAAAAA
T

NAACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTACATTGATTCAGCATTCTTC
CACTGACAGGAATGGAGTTCTTCCTAAGCTGACCCATGTAAACCTCAGTG
GAGACACTTGTAGCCATTTACACCATATTGTAGTTTAGTAAGATAGACAA
TATTCAAGCCTTATACACTCATGCTACAAAAGCGGAAACCACCAAAATAA
CTGTTCAAAACATCAAATATTAATGATATCTCCATAGTTCATTCAGCCCT
TGTTCTGATGATCAACAGTGAATGTATCAGTTCTAAAAGAAAATTTAAAA
TCACAACTCATTCATATGAATATTCATGTGAAGAAAATTAGTTTTGAAAT
AAATCTTTGATTTTATCAAATAATGCAAGAAAGAATCCTAGCATCCAACA
CAACACAGGACAGGACTTAGAACAGAAAATGAGGGGAGGGGTTAAAACTC
TAAAGCGCTGATGAGCTCTTACGTTTTTTTCGACACTCAAATTTCTTTAT
ATAACATAAAAAATTGTTTTTTAAATATATAAAAATGTATTAGAAGAAAT
TATGCTTTTTTGTACCCTAAGGGAACATACTAATATTTATGAAGTTTTAA
CCTAACGGCGATAGGCTTTTCCCGTTGAAAACGGTTTTTTATCCCGGCTT
GGGGTTGGGTACCTTTGCTCTTTTCACTCTCCTCACCCCATTTCTTTGTT
CCCCCCATTCCCCCCACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_c15.g1 MSMg01no448_c15.g1 CHROMAT_FILE:
MSMg01no448_c15.g1 PHD_FILE: MSMg01no448_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:20 2005
         (487 letters)



>mm_chr1_11094533_11095419
          Length = 887

 Score =  864 bits (447), Expect = 0.0
 Identities = 477/487 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacattgattcagcattcttccactgacaggaatggagttcttcctaagctgacccat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 687 cttacattgattcagcattcttccactgacaggagtggagttcttcctaagctgacccat 628

                                                                       
Query: 61  gtaaacctcagtggagacacttgtagccatttacaccatattgtagtttagtaagataga 120
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 627 gtaaacctcagtggagacactggtagccatttacaccatattgtattttagtaagataga 568

                                                                       
Query: 121 caatattcaagccttatacactcatgctacaaaagcggaaaccaccaaaataactgttca 180
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 567 caatattcaagccttatacactcatgctacaaaagaagaaaccaccaaaataactgttca 508

                                                                       
Query: 181 aaacatcaaatattaatgatatctccatagttcattcagcccttgttctgatgatcaaca 240
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 507 aaacatcaaatattaatgatatccccatagtgcattcagcccttgttctgatgatcaaca 448

                                                                       
Query: 241 gtgaatgtatcagttctaaaagaaaatttaaaatcacaactcattcatatgaatattcat 300
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 447 gtgaatatatcagttctaaaagaaaacttaaaatcacaactcattcatatgaatattcat 388

                                                                       
Query: 301 gtgaagaaaattagttttgaaataaatctttgattttatcaaataatgcaagaaagaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtgaagaaaattagttttgaaataaatctttgattttatcaaataatgcaagaaagaatc 328

                                                                       
Query: 361 ctagcatccaacacaacacaggacaggacttagaacagaaaatgaggggaggggttaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctagcatccaacacaacacaggacaggacttagaacagaaaatgaggggaggggttaaaa 268

                                                                       
Query: 421 ctctaaagcgctgatgagctcttacgtttttttcgacactcaaatttctttatataacat 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 ctctaaagcgctgatgagctcttacgttttttttgacactcaaatttctttatataacat 208

                  
Query: 481 aaaaaat 487
           |||||||
Sbjct: 207 aaaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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