BAC Information

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BAC

Clone NameMSMg01-448E06
Chromosome1 (Build37)
Map Location 94,576,968 - 94,708,903
singlet/doubletdoublet
Overlap genenone
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448E06.T7 (MSMg01no448_e06.b1)MSMg01-448E06.TJ (MSMg01no448_e06.g1)
ACCAG536521AG536522
length777753
length of high quality
(start - end)		409 (70 - 478)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no448_e06.b1 PHD_FILE: MSMg01no448_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:29 2005CHROMAT_FILE: MSMg01no448_e06.g1 PHD_FILE: MSMg01no448_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,708,536 - 94,708,903)(94,576,968 - 94,577,209)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAATCCGCGGAATT
CTCAGCTCCATTACCTGTCTGCCTGCATGCTGCCATGCTTCCTGCCATGA
TAATGGTCTAAATCTCTAAAACTGTAAACCAGCCCCAATGAAATGTTTCC
TTTCTAAGAGCTGCTGTGGTGTCCCTTCACAATAGATCCCTAACTAGGAC
ACATGCCCAAAGGTCACCCAGATCTAGATAAGGCCTCCTCGTGGAGACTC
TCTTCGAAGGTGATTCTATGTTGTGCTAAGATGACAACTAAAACCTAAGC
ACCACACCAGCATAGTAACTTGTTGGAATAGGTTACCTGAGACCCCTGGC
CCTTAAACCACACAAGATCCCTATGACAAATGCACTGACCAAGGCTTTCA
TCTTCAACCCTTGTTGTCTTTGTGGCCTCAGCTTCCTGTGTTTCTGACTC
AGACCACTTGAGAAGTCTGGAACTAGGGGCAGTCAGGGTGACTCTTAACT
GTCCCACACAGCGAGGCTCCACCTGCCTGTGTACTCTGAACTGTTGGTAC
TTTCCAGGTGTTTGCCACGTTCTGTTAGAACCTTTCGCCTACCCACCCTT
ATTGTCGGTGCCCCTCATAATTCCCTTCGCTGGGCCCCCGACGAACATTT
TTTAGTTTTATCACATATTTTATCGTTGGCAAAACAGCTATTATACTACT
TCTTTTCCCCCCTTTTTTTATTTCCACTCCCTCGGCTCTTTAACGCATCC
TTCTTTTTTTTTCTATTTCCGCCCCCG

AAAANCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACTAGAGGAATTCCAGACTACAGCCCATGTGTA
AGTCTAGGTGAGCCTGTGGGGTCCACAGTCTAGAGTCTGATATTTAGGGA
AGGCAGAGAACCCCAATCTAGGATTGCTCAACTGGGATCCAAAAATCTCA
CTCCTGTTTGGGAAGCAGGCAGTGTTTGTATCTGTGATCGATTTCAGGCC
CAGTTTGGATCTGTGATCAATTTCCCGGCTCCTTCTTGGCTCTTAAGCAT
TTACTTCCCAGAGTGCTATCTTTTGTCCCAAATGGATTCTTGTTGCTAGA
TCCCAGCTGGTTGAGTATTCCACGGATGTCTTCTGCCCCCCCCCCCTCGT
GATACCCCGTTTTACACAACAGAGGCTGCTTCTGTTTGTCCCCCCTTCAG
CCCCAGCATCACCATCCACAAATAGTTCTCGCCGGGTTACTTCCCCTCCG
AAGCCACCATATATTGGACTCTCCCCCATACCCTCTCCCCCCCCCTTTTT
TCCTGCTTTAAAGATATCTTTTGAGATTCTGCACTCCTCCCCGCCTTCCT
TTCTCTCGTTGTTCTTCGTTTCTTTTCTTCTTTTTCTCGTTGCCGTTTGT
TTTCTCTTTTTTCTCCTTCCTTGCCCCTATTTACGCTTAATCCCTTTAAT
CCCCCCCAACTTATCTTCCTATATTCCGTGGTCGGCCTCGATCTGTCTTT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_e06.b1 MSMg01no448_e06.b1 CHROMAT_FILE:
MSMg01no448_e06.b1 PHD_FILE: MSMg01no448_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:29 2005
         (409 letters)



>mm_chr1_94708098_94708906
          Length = 809

 Score =  648 bits (335), Expect = 0.0
 Identities = 364/383 (95%), Gaps = 16/383 (4%)
 Strand = Plus / Minus

                                                                       
Query: 28  atgataatggtctaaatctctaaaactgtaaaccagccccaatgaaatg-tttcctttct 86
           ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 806 atgataatggtctaaatctctaaaactataaaccagccccaatgaaatgttttcctttct 747

                                                                       
Query: 87  aagagctgctgtggtgtcccttcacaatagatccctaactaggacacatgcccaaaggtc 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aagagctgctgtggtgtcccttcacaatagatccctaactaggacacatgcccaaaggtc 687

                                                                       
Query: 147 acccagatctagataaggcctcctcgtggagactctcttcgaaggtgattctatgttgtg 206
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 686 acccagatctagataaggcctcctcgtggagactctcttcaaaggtgattctatgttgtg 627

                                                                       
Query: 207 ctaagatgacaactaaaacctaagcaccacaccagcatagtaacttgttggaataggtta 266
           |||||||||||||||||               |||||| |||||||||||||||||||||
Sbjct: 626 ctaagatgacaactaaa---------------cagcatcgtaacttgttggaataggtta 582

                                                                       
Query: 267 cctgagacccctggcccttaaaccacacaagatccctatgacaaatgcactgaccaaggc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cctgagacccctggcccttaaaccacacaagatccctatgacaaatgcactgaccaaggc 522

                                                                       
Query: 327 tttcatcttcaacccttgttgtctttgtggcctcagcttcctgtgtttctgactcagacc 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tttcatcttcaacccttgttgtctttgtggcctcagcttcctgtgtttctgactcagacc 462

                                  
Query: 387 acttgagaagtctggaactaggg 409
           |||||||||||||||||||||||
Sbjct: 461 acttgagaagtctggaactaggg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_e06.g1 MSMg01no448_e06.g1 CHROMAT_FILE:
MSMg01no448_e06.g1 PHD_FILE: MSMg01no448_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:29 2005
         (244 letters)



>mm_chr1_94576768_94577411
          Length = 644

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccagactacagcccatgtgtaagtctaggtgagcctgtggggtccacagtctagagt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccagactacagcccatgagtaagtctaggtgagcctgtggggtccacagtctagagt 260

                                                                       
Query: 61  ctgatatttagggaaggcagagaaccccaatctaggattgctcaactgggatccaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgatatttagggaaggcagagaaccccaatctaggattgctcaactgggatccaaaaat 320

                                                                       
Query: 121 ctcactcctgtttgggaagcaggcagtgtttgtatctgtgatcgatttcaggcccagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcactcctgtttgggaagcaggcagtgtttgtatctgtgatcgatttcaggcccagttt 380

                                                                       
Query: 181 ggatctgtgatcaatttcccggctccttcttggctcttaagcatttacttcccagagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatctgtgatcaatttcccggctccttcttggctcttaagcatttacttcccagagtgc 440

             
Query: 241 ta 242
           ||
Sbjct: 441 ta 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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