BAC Information

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BAC

Clone NameMSMg01-448F17
Chromosome1 (Build37)
Map Location 121,008,717 - 121,009,061
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753, Gli2
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448F17.T7 (MSMg01no448_f17.b1)MSMg01-448F17.TJ (MSMg01no448_f17.g1)
ACCAG536591AG536592
length752790
length of high quality
(start - end)
203 (333 - 535)373 (76 - 448)
definitionCHROMAT_FILE: MSMg01no448_f17.b1 PHD_FILE: MSMg01no448_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:36 2005CHROMAT_FILE: MSMg01no448_f17.g1 PHD_FILE: MSMg01no448_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCG
CGGAATTCCATGTCAACTGCCCGTCTGGGTAAAACTTGAGTGGTTTTAGT
TTGAAAGAAAATACACATTTCATAGATGTTTACAGAGTCGAGTCGGAACG
AGGATAAGCTTGTGGGTGTGTGAGAAAGAACATATGTGGGTGTAAACAAA
CCCCGAAGCTAAGATTTGTACTCATCAGGAAAAGGGCTCCGTTTTCCTCT
TTTTACTCATAGAGATAACTGTGCGTGTATTTACATGTGAGCATGTATGT
GTGAGTGCTTGGTATTTGTTTATATGTTTTTGCATATGCATATATGTGCG
TGCATGCATGTGTGATGTATGTTCATGTGTGAGCATGTATGTGTGTATAT
GTACATGTGTATACATATGTGTGCATGTGTAGGTACACATGTGTTATGTG
TTCACATGTGTGCTGGTATGTATGGTTAACTTCAGGCTTTTTCCTCTACT
GCTCTCCACTTTACTTTTGAGACAGGAATTCTCACTAATGCTGCAGCACA
GGAAGCCGGCTAGACTGAGCTTGAGGGATCTATTATGTCTTACCCCCATC
CGGAGCACTGGTGTGACAGGGCATACTATGCCTCATTTTTTACGTGGGTG
GCGGTGAATCTATAAGTTTGGCCTTTATGCTTTGTGGGGTGGCCGGTTAC
ATCCCCTTCCCTGTTTTTAACTCGTAATAAAGAATTTTCTACCTTGGTAA
AC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGTCTCCAAGCTTTCGGACTCCC
ATGCCAGCAGCCACAGTCACACCGATAAAACCTTCCAGTGGAGCCCAGTC
AATCAAAGTGCTGACTAGTGTTTTGTCAACTTGATAGATGCTAGAGTCAT
TGGCTTTCCATTGAGAACATGCCACCGTAAGATTGGCCTGTGGGCAAGTC
TATGGGACATTTTCTTGATTAATTCTTGGGGTGGGAGGGTCCAGCCTGTT
ATGAAATACAATGCAGTAGTGTAAGGGGTAGTTCCTGGTGGGCCCATGCC
AAGGTGTCCCCCTGAGAAATCATACCATGTGAGAGACCTGGTTTATCTTT
ATAAGGGAAGTTTATTGTGGGGGAAGGGAGGACAGGGGGACCTGGAGAAG
GGGNNGGAGNAGATATATNAGATCTATAGTGTTATTGCTTAGGATCGGTG
ACCTATAATCAATTCTTAATTCTTCTATATCTCTGCGTGCCCCCTTTTTT
TTTCCCACTCGTTCTTCTTTTTTTTTCTCCCTCTCCCCCTTCTTCCCTTG
CCTATCCCAACACCTCTTTCTTTGTTCCATTCTCCCCTCTCTTTATCCCC
TTTTCCCTTCTATCTCTACTTTTACCTTCATCTCTTCTACACGCGAGACC
GGCCACTCTTTCTCTTTTTTTCACTCCACCCTCTATCTTCTTTTCTCCTC
CCCTACTAGTCACTACCTATTCCCCTTTTATACTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_f17.g1 MSMg01no448_f17.g1 CHROMAT_FILE:
MSMg01no448_f17.g1 PHD_FILE: MSMg01no448_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:37 2005
         (373 letters)



>mm_chr1_121008289_121009061
          Length = 773

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 29  ccagcagccacagtcacaccgataaaaccttccagtggagcccagtcaatcaaagtgctg 88
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ccagcagtcacagtcacaccgataaaaccttccagtggagcccagtcaatcaaagtgctg 714

                                                                       
Query: 89  actagtgttttgtcaacttgatagatgctagagtcattggctttccattgagaacatgcc 148
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 713 actagtgttttgtcaacttgatagatgctagagtcattggctttccattgagaaaatgcc 654

                                                                       
Query: 149 accgtaagattggcctgtgggcaagtctatgggacattttcttgattaattcttggggtg 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 accgtaagattggcctgtgggcaagtctatgggacattttcttgattaattcttggggtg 594

                                                                       
Query: 209 ggagggtccagcctgttatgaaatacaatgcagtagtgtaaggggtagttcctggtgggc 268
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 593 ggagggtccagcctgttatgaaatacaatgcagtagtggaaggggtagttcctggtaggc 534

                                                                       
Query: 269 ccatgccaaggtgtccccctgagaaatcataccatgtgagagacctggtttatctttata 328
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccacgccaaggtgtccccctgagaaatcataccatgtgagagacctggtttatctttata 474

                                                        
Query: 329 agggaagtttattgtgggggaagggaggacagggggacctggaga 373
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agggaagtttattgtgggggaagggaggacagggggacctggaga 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)