Query= MSMg01no448_k01.b1 MSMg01no448_k01.b1 CHROMAT_FILE:
MSMg01no448_k01.b1 PHD_FILE: MSMg01no448_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:58 2005
(368 letters)
>mm_chr1_58416840_58417610
Length = 771
Score = 460 bits (238), Expect = e-134
Identities = 324/374 (86%), Gaps = 39/374 (10%)
Strand = Plus / Minus
Query: 1 cagtgggtgcctgcaggtatctgcacacagaggcaggcatatatgtgcaaagacacataa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cagtgggtgcctgcagatatctgcacacagaggcaggcatatatgtgcaaagacac---- 612
Query: 61 ataaataaataaataaataaataaataaataaataaatatcaaatagataagtaagaaaa 120
||||||||||||||||||||||||||||||||||||
Sbjct: 611 ------------------------ataaataaataaatatcaaatagataagtaagaaaa 576
Query: 121 taaattctaaaaatgtaagatggagatcaatctaggaagatgcccagtgtcagtatcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 taaattctaaaaatgtaagatggagatcaatctaggaagatgcccagtgtcagtatcagg 516
Query: 181 cctggcttctacactcaaacacatatgaacacaagcacacacacaagagcatgcacacat 240
||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||
Sbjct: 515 cctggcttctacactcaaacacacatgaacacaagtatacacacaagagcacgcacacat 456
Query: 241 ggacctttta--cacac--gcacattcgcacaacaaacagtcatttctggttgaaaggat 296
| ||| | ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 455 gtacc----aaacacacatgcacattctcacaacaaacagtcatttctggttgaaaggat 400
Query: 297 tatggctgatttcaagttccatcttactcttctcc-aaagtggatatgtctt-c-ctctc 353
||||| ||||||||||||||||||||||||| | | |||||||| ||||||| | |||||
Sbjct: 399 tatggttgatttcaagttccatcttactctttttctaaagtggacatgtctttctctctc 340
Query: 354 tttctttctttctc 367
||||||||||||||
Sbjct: 339 tttctttctttctc 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 771
Length adjustment: 9
Effective length of query: 359
Effective length of database: 762
Effective search space: 273558
Effective search space used: 273558
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_k01.g1 MSMg01no448_k01.g1 CHROMAT_FILE:
MSMg01no448_k01.g1 PHD_FILE: MSMg01no448_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:58 2005
(377 letters)
>mm_chr1_58267530_58268306
Length = 777
Score = 549 bits (284), Expect = e-161
Identities = 349/390 (89%), Gaps = 34/390 (8%)
Strand = Plus / Plus
Query: 5 aaggccagcagcacgctgcaggggtgagcggctgacaggtcgttccttctgcgcctgttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaggccagcagcacgctgcaggggtgagcggctgacaggtcgttccttctgcgcctgttg 247
Query: 65 gaaatgc-----------------gccccacctcagttggccaatgcccctttaacagga 107
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaaatgcaccccacctggaaatgtgccccacctcagttggccaatgcccctttaacagga 307
Query: 108 gggagacaggaagaaaacaaccacacatgactctcgattgatagcaacccctcagccaga 167
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 308 gagagacaggaagaaaacaaccacacatgactctcaattgatagcaacccctcagccaga 367
Query: 168 ccgttaccctggaggcagaacaggactgcctccttatttctaggacaaattataaagatg 227
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 368 ccatcaccctggaggcagaacaggactgcctccttatttctaggacaaattataaaaatg 427
Query: 228 tcaaaggggtgggggtgttggggcaatctacacaagcctgaagatggtgtggtgccacga 287
|||| |||| || || ||||| |||||||||||||||||||||||||
Sbjct: 428 tcaa-gggg-ggcgg------ggcaa---------gcctgaagatggtgtggtgccacga 470
Query: 288 ccggctcatttgtttagacccaggggctcagtttgactgaagtacagtgtccactagggc 347
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 471 ccggctcatttgtttagacccaggggctcagtttgactgaagcacagtgtccactagggc 530
Query: 348 ccatcaccccacggactccccaaggtgtgg 377
||||||||||||||||||||||||||||||
Sbjct: 531 ccatcaccccacggactccccaaggtgtgg 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
