BAC Information

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BAC

Clone NameMSMg01-448L19
Chromosome1 (Build37)
Map Location 37,384,287 - 37,384,531
singlet/doubletsinglet
Overlap geneInpp4a
Upstream gene4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3
Downstream gene6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448L19.T7 (MSMg01no448_l19.b1)MSMg01-448L19.TJ (MSMg01no448_l19.g1)
ACCAG536879AG536880
length970734
length of high quality
(start - end)
---245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no448_l19.b1 PHD_FILE: MSMg01no448_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:07 2005CHROMAT_FILE: MSMg01no448_l19.g1 PHD_FILE: MSMg01no448_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCATACATTTGCGTCCGCTAATATGATTTCACTATAGTTTTTCCAGAA
TACGCNGGAATTCCCGTACTATTTGCCAGCAGAAAGACTGCGACAGTTCT
CATAGATCTCTTACCATTCCTGTACCCCATACCATCATGCAGGTACTCGG
TCATCTAGGCTCCCACCCGATGACTGATTATCGTCTGGCCGATAGTTCGA
CTGACTGCCTTATATCAACTCCTCTCCCTCCACTAATCCAAAAAATAGCG
CGCTTGTACCTTCGCTTATCTAACTCCCTCTTACTCTTTGTCTTTTTGTC
TCATGATTTCCCTCACTCATTTTACTCCTCTTACCTCCTCACCCCCTCCA
TTTACCTCCTCCCTTCTTACATTTCCCCGACAATATCATGAACATCACTC
TTGCTTTATCTATACACCATTCTTCCACTCTCACATCTCTTTCCACTTAT
CAACTTATCATTTCTTCTCCAATATATCCTTACTAGCTATCCTCAACTTT
ATCCTTTCATTCCCCGGCTCATTGAACAGTACTTGCATTCTGTTTTATAC
CCGCAAATAATTCTCCCCCCCTCTTATATTTCTAACACCTCCTTACATTT
CTCTGTTTAAATGCTCCCTTATTCCACTTTATTTCACCTTTGTTATGCCC
CCTTTCAGCCCTTTAACATAATTTACGATCATTTTCCTCACGCCCCTTCC
TTTATTCCCTGTTGCTTACCTTTCCCATTCATTTATTTCCCCCTTTTATT
CATCTACAAAGTATTCTGAAATTGTGTAAACAACATGATGACACGGTTAA
CAAGTTTTTCTCCGCCAATATCCCCCCATTTTTTTAAATTCTCCCCTGTG
CCACTCCAAATATTCTCATCTCTTTATGACTCCCCCACTTCCTAACTACC
GCCTTTACTGTTCGCTAACCCCTTCTTTTAACCTCAATTTCGACCCACCA
TCCTATATCAATCTCTATCN
NNNAACGATGAAGNTGGTAGCCTGGCGGNCGCCTGGTTCAGCATTTTAGG
TGAACTATAGAAGTACAACGAAATTCACTGGTTTTCATTTCACACATACA
TAGAATTGATACCGAGGTGTGAACCCAAGGTGTCACATGCTAGGCAAGTG
GCCTGCTGCTGCTGCATCGCTACTGTCCCACAGTGGCCCCAGTCTTCTGC
TCTGTGGCTTCTTTCTCACTGTGATGGCCTCTTACAGAACACTCATCAAT
TCTATCATGCATTGTCAGCCCTCCCCCCGCCCCCCATATCCCCCGTGAAT
GGTTGGAGTGTAAGTGTGNCGTAGTTTATTCAGNCACACAGACCTCTGCT
GCTTTCCCTGTTTGTTCCCGCTACACAAATACTACCCCAGCGTAGAGAAT
GTTATAGGTTAAAAATCCCCCAATAAGGTGATCATGCAGCCTGGCTGCAT
CGTGAGTGTTACAACCTTGATATCCTGTGTACACTGCGGGTGTTTTATCT
CTGTGCTCCAAATCTTACCCATGTTTCTTACCCTTCTCTTTTCTTTTTTT
TTCTTTATCCCCTTTTCCTCTGCATGCTCTCTCTCTCCCTTTTTCCTCTC
CTCCCCCCCTTTTCCCTTTTCCCCCTTCTCCCCTTTCCCTTTCTTTTTTT
TTTCTCCCACTCCTACCTTCCCTATTATACCCCCCCTTATATCTATCTCC
CCCTTCTCACTTTCCTCCCCATTTTTTCTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_l19.g1 MSMg01no448_l19.g1 CHROMAT_FILE:
MSMg01no448_l19.g1 PHD_FILE: MSMg01no448_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:07 2005
         (245 letters)



>mm_chr1_37384087_37384731
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactggttttcatttcacacatacatagaattgataccgaggtgtgaacccaaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcactggttttcatttcacacatacatagaattgataccgaggtgtgaacccaaggtg 260

                                                                       
Query: 61  tcacatgctaggcaagtggcctgctgctgctgcatcgctactgtcccacagtggccccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacatgctaggcaagtggcctgctgctgctgcatcgctactgtcccacagtggccccag 320

                                                                       
Query: 121 tcttctgctctgtggcttctttctcactgtgatggcctcttacagaacactcatcaattc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 tcttctgctctgtggcttctttctcactgtgatggcctcttacagaacactcatcaaacc 380

                                                                       
Query: 181 tatcatgcattgtcagccctccccccgccccccatatcccccgtgaatggttggagtgta 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tatcatgcattgtcagccctccccccgccccccacatcccccgtgaatggttggagtgta 440

                
Query: 241 agtgt 245
           |||||
Sbjct: 441 agtgt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)