Query= MSMg01no448_l24.b1 MSMg01no448_l24.b1 CHROMAT_FILE:
MSMg01no448_l24.b1 PHD_FILE: MSMg01no448_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:08 2005
(503 letters)
>mm_chr1_128041846_128042747
Length = 902
Score = 934 bits (483), Expect = 0.0
Identities = 500/509 (98%), Gaps = 7/509 (1%)
Strand = Plus / Minus
Query: 1 ttacttgtagattgaggaagaggataagtatgttaatggaggtccgagagaatggaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttacttgtagattgaggaagaggataagtatgttaatggaggtccgagagaatggaaaat 547
Query: 61 tacagcaaggattttttttctctctgcaaccagttcagcttcattctttctggtgctttc 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tacagaaagga-tttttttctctctgcaaccagttcagcttcattctttctggtgctttc 488
Query: 121 cagccacaaatatattaaaaatcgaaggcttgtttattcaaacattctctcaataaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cagccacaaatatattaaaaatcgaaggcttgtttattcaaacattctctcaataaatgt 428
Query: 181 ttgttgtttaaggcatcatctgggctctttcattgggaatcaaagccgtaagacctagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgttgtttaaggcatcatctgggctctttcattgggaatcaaagccgtaagacctagct 368
Query: 241 gaaaacaactaatagcttgtaccctctcaaaataccattcacttctataggcagaaattc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaaaacaactaagagcttgtaccctctcaaaataccattcacttctataggcagaaattc 308
Query: 301 tgatttccaagaagccatgggcatttaaatggcagctcagactcagaaaaagctaacgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgatttccaagaagccatgggcatttaaatggcagctcagactcagaaaaagctaacgac 248
Query: 361 atagtggccatgtaatactcctttccactatgtatccattgtgtacttctctctctctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atagtggccatgtaatactcctttccactatgtatccattgtgtacttctctctctctcc 188
Query: 421 atatctccttccctctcttccccacctctctctctt------tctctctctctctctctc 474
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 187 atatctccttccctctcttccccacctctctctctttctctctctctctctctctctctc 128
Query: 475 tggtgccatccactatggttcttttgaga 503
|||||||||||||||||||||||||||||
Sbjct: 127 tggtgccatccactatggttcttttgaga 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 902
Length adjustment: 10
Effective length of query: 493
Effective length of database: 892
Effective search space: 439756
Effective search space used: 439756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_l24.g1 MSMg01no448_l24.g1 CHROMAT_FILE:
MSMg01no448_l24.g1 PHD_FILE: MSMg01no448_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:08 2005
(374 letters)
>mm_chr1_127895185_127895958
Length = 774
Score = 634 bits (328), Expect = 0.0
Identities = 337/340 (99%)
Strand = Plus / Plus
Query: 35 caaacaaacaaacaaacagccctgccatctctcagcttaaagacagggcaggttggagaa 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 caaacaaacaaacaaacagccctgccatctctcagcttaaagacagggcaggttggagaa 294
Query: 95 ctttcctcctacatggaaagatgagcttttgtctttcacttgggttttgcagactgtctg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctttcctcctacatggaaagatgagcttttgtctttcacttgggttttgcagactgtctg 354
Query: 155 aagcctacattaaggagagtaacctgctttacctgtttaccaatccaaaagttcacttca 214
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 355 aagcctacattaaggagagtaacctgctttacctgtttaccaatccaagagttcacttca 414
Query: 215 cccccaacacacagaagcacctagaacaatgtttgaacaaggatctgacttttccattct 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cccccaacacacagaagcacctagaacaatgtttgaacaaggatctgacttttccattct 474
Query: 275 gatgcataaaatccataaaataaaccactgtagtaattaaggagccggtatttagagctc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gatgcataaaatccataaaataaaccactgtagtaattaaggagccggtatttagagctc 534
Query: 335 gcagaaacgatgaaacgggaaaggggataggacatcaccc 374
||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 535 gcagaaatgatgaaatgggaaaggggataggacatcaccc 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
