BAC Information

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BAC

Clone NameMSMg01-448M03
Chromosome1 (Build37)
Map Location 193,990,140 - 193,990,538
singlet/doubletsinglet
Overlap genenone
Upstream geneAtf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448M03.T7 (MSMg01no448_m03.b1)MSMg01-448M03.TJ (MSMg01no448_m03.g1)
ACCAG536894AG536895
length729842
length of high quality
(start - end)
403 (46 - 448)---
definitionCHROMAT_FILE: MSMg01no448_m03.b1 PHD_FILE: MSMg01no448_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:08 2005CHROMAT_FILE: MSMg01no448_m03.g1 PHD_FILE: MSMg01no448_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACTTTACCAAAATTCCTCTGGAAATTCCTCAGCCCTTAAAAAC
CCTTAGTCTTGCAGGTTTTTGGACTATAAAAATCCCAACATTTCCTGTGT
TCTATGCTATATTTTCAAACCCTGCTTTAGAGAGATAGCTCCTGTCTGAT
AGATTAAGGTTGCTTAATTTGACCAGAGACTTTGGATAATGGTTTTTACT
CTTGATTGGTGGGATTGACTGACTGTCCTGCCCCAATCCCATCATTCTGT
CTCGTGTTCCGTGTTGCTGGAAACCGCTAAGTGATGCTGCTGTGGGTGCT
TGGGGAGGAGCACAAGCCTGGAGGAAGTCCAGCTCCCTCTCCTCATCGTG
AGAGAGTACAAGGAGGGGCACCAGGCTGGAGGAAGCCCCGACTCCTTTCC
CTGCGGCAGTGCGCACAGCGGGCTCCCTTTTCATATCGATGATCGTTTAC
CGAATTACTATCTGTTCCGTTTCGTGCATTCTCTTCCTTGCTCTGGTTGC
AGGACTTTGAGTAGTTCACACCCTGTCTTCTAGCCGCATTTCTACTCGTC
CACCCCGCCATTTTGCATTCCGCCCGCCGCATCTTTTCACTCCCATGCCC
CCTTTCCCTCCCATCACTGTTTCAATTCTCCCCTCTCGGCTTCGTTCTTC
TTTTCTCAGGTTTTTCTCTCCCCTTCCTG
NNTTTCCGATGCTAAAGGTAGGACTGGCGGGCGCCCGGTCGCCGACTTTA
TGTGGACTATATAAATATCCTGCGGGGATTCTTATGAATAAAAAAAAACC
CTCCCCCCCCTCCTCACCAAGGGGGGGTTGTGGGGTGGAGGGTTCCTCCC
GAAACCCCCCCAAGGGGGGGGGGGAGAGAAAAAAGGAGATTTTCAATACC
ACCCCTCCCCCACATTAGTGGGGTGAGGGGGGAGTTTTTTTTAACCCACA
TATTAATTTGTTTTTTTTTTGGGGAAAAAAAAAACAAAAAAAAATTTCTC
TCTACCTCCCAAANTTTTTTATTTTCCCCCTCTTCTCTCTTTCTAAAGAA
GGGGTTTTTTCTGGTTGGGGAAAAGAAAAGATAAATAGAGCACATGGCTT
CCTCCCAATAAGGTGGTTCCCGGCGTTTATCGCCTGTACAATCCCACGAT
GTTGTTTTTTTCGCTATTGGTCCACTCTTTTTTATTGCGCATAGAGATTG
CCTCTTATTTTATGTGTCTTTTCTCTTTTTTAGCCTCGCCTTTTTGTTTT
TGGTTTTTTGCGTTCTGTCTCCTCCTCTCTTTCTCGCTCGTCGTTGGCTG
TTCTTTTTTGTCTTATTAATCCCCTTCACCTTTTCTATTTCTCTTCTGTT
TCTCTCGTCCCTGTTTTGTTTTTTGTGTTTTATGTTTCTTATTTTTCACT
TCTCCTGCCTTTTCCTTTTTTTTTCTCCCTTCCTCTATTCTACTCTCTCT
TTCGTCCCGGGTCTTACCTGTCTGGCCCATATGCTTTATCTCGTCTCTCC
CATTTCAGATACATCCGCCCCGTCTTCCCTTCTTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_m03.b1 MSMg01no448_m03.b1 CHROMAT_FILE:
MSMg01no448_m03.b1 PHD_FILE: MSMg01no448_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:08 2005
         (403 letters)



>mm_chr1_193989936_193990738
          Length = 803

 Score =  748 bits (387), Expect = 0.0
 Identities = 396/399 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctactttaccaaaattcctctggaaattcctcagcccttaaaaacccttagtct 64
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacctaaccaaaattcctctggaaattcctcagcccttaaaaacccttagtct 264

                                                                       
Query: 65  tgcaggtttttggactataaaaatcccaacatttcctgtgttctatgctatattttcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaggtttttggactataaaaatcccaacatttcctgtgttctatgctatattttcaaa 324

                                                                       
Query: 125 ccctgctttagagagatagctcctgtctgatagattaaggttgcttaatttgaccagaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctgctttagagagatagctcctgtctgatagattaaggttgcttaatttgaccagaga 384

                                                                       
Query: 185 ctttggataatggtttttactcttgattggtgggattgactgactgtcctgccccaatcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttggataatggtttttactcttgattggtgggattgactgactgtcctgccccaatcc 444

                                                                       
Query: 245 catcattctgtctcgtgttccgtgttgctggaaaccgctaagtgatgctgctgtgggtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catcattctgtctcgtgttccgtgttgctggaaaccgctaagtgatgctgctgtgggtgc 504

                                                                       
Query: 305 ttggggaggagcacaagcctggaggaagtccagctccctctcctcatcgtgagagagtac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 ttggggaggagcacaagcctggaggaagtccagctccctctcctcatcgtgagagagcac 564

                                                  
Query: 365 aaggaggggcaccaggctggaggaagccccgactccttt 403
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggaggggcaccaggctggaggaagccccgactccttt 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)