NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTACATTATTCCGAGACATTTGCCTTTGTGTGTTGGGA
TTTTTCTCATGAATTTTAATATTACTTCTTTGTTTGTATTTTTGGTATCT
TGACCCTAATGTGACATGGAGAGATGGTGGTGGTGGTGGCAGTTGTGTCC
CTTAGGAGTTCTTAAGTGTTCATTTATTTCCATAAATTTAGGGAATTTTC
TCATAATACAGTTACTAAGTTTCTGCGCCTTTAGTTTTGTCATGGGTCCT
TCTACCCCATGGATTCTTAGCTTTTGATCTCTTGATCATTTACTATATCT
ATTAAAAGTTGTGGTCATTCTCCTCTTTAATTTTTTGTATTTATGTCTGA
ATATTGTATTTCTTCAAACAAGTCCAGCTGGTAGTATTTCTTCTGTTTGG
TGTAATCTGTTGGTGATGTTTTTCATTGTGGTTTTCATTTTTAATATTTC
TGTTTATTTCACTTTCTTTCCTTAACTATGTTACTGTCTTCTTCTCTAGA
TCCTGAGTTGATTTCCTTACTTCAGTCTCCTGCTTGCTTATATCCTCTTT
TAAGTCATTGATCAGTTTTACAAGTAAACATTTGAATTCTGTCATATTTT
TCCTATTCCAGTATCTTTGGATCTGGTAATTAAAGAGTTTTCACTTTTTG
GGAATCATGGTGAATTTTTCATTATTCCTATGCTTC

GATTCCACTATGAAGTGGGAGGCCTGGNGGCCGCCTGGTTTCAAAACAGG
GGNGAACTATAGAAGGTTACAAGAAATTCTCTGTTTTGCTCTGTAACCCC
CCTTTTTTTGTTTTGTTTTGTTTTGTTCCGTTTTTCAAGACAGAGTTTCT
CTGTATAGATAGCCCTGGCTGTCCTGCAACTCACTTTGTAGACCAGGCTG
GCCTCGAACTCAGAAATCAGCCTGCCTCTGTCTCCCGAGTGCTGGGATTA
AAGGCATGTTCCACCACACCCAGCTTGTACCCCATTTTTAAATTGGGTTA
TTTGGATATCAGCCCTCTGTCTTAAGTANTTTTGGTAAAAATCTTTTCCC
AATCTGTAAGTTGCCATTTTGTCCTATTGACAGTGTCATTTCCCTTACAG
AATTTTTTCAGTTTCATGAGGTCCCATTTATTAATTGTTGATATTAGTGC
CTGAGTTATTTGTGTTCTGTTCAGGAAATTGTTTCCTGTACCTGTTATAC
CAATATATTTAATATTATTTGCAACTATCGTGAAGGGTATTATTTGCCAG
ATTTCTTTCTTAGTCCATTTATTGCTTGTATAAAACAGGGCTGTTTTTTT
TTTCAGTTAATTTTGTATATAGCCACTTTGCTGAAGGTATTTATCATTTA
TAGGAGTTCTCTGTTTTTTTTTTGGAGCTACTTATATATACTTATATATC
CTTATCTGCCAAAAGCATAATTTTGTCTTTTTCA

Query= MSMg01no449_b16.b1 MSMg01no449_b16.b1 CHROMAT_FILE:
MSMg01no449_b16.b1 PHD_FILE: MSMg01no449_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:37 2005
         (584 letters)



>mm_chr1_55334802_55335785
          Length = 984

 Score = 1114 bits (576), Expect = 0.0
 Identities = 579/580 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacattattccgagacatttgcctttgtgtgttgggatttttctcatgaatttt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattctacattattctgagacatttgcctttgtgtgttgggatttttctcatgaatttt 843

                                                                       
Query: 65  aatattacttctttgtttgtatttttggtatcttgaccctaatgtgacatggagagatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aatattacttctttgtttgtatttttggtatcttgaccctaatgtgacatggagagatgg 783

                                                                       
Query: 125 tggtggtggtggcagttgtgtcccttaggagttcttaagtgttcatttatttccataaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tggtggtggtggcagttgtgtcccttaggagttcttaagtgttcatttatttccataaat 723

                                                                       
Query: 185 ttagggaattttctcataatacagttactaagtttctgcgcctttagttttgtcatgggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttagggaattttctcataatacagttactaagtttctgcgcctttagttttgtcatgggt 663

                                                                       
Query: 245 ccttctaccccatggattcttagcttttgatctcttgatcatttactatatctattaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ccttctaccccatggattcttagcttttgatctcttgatcatttactatatctattaaaa 603

                                                                       
Query: 305 gttgtggtcattctcctctttaattttttgtatttatgtctgaatattgtatttcttcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gttgtggtcattctcctctttaattttttgtatttatgtctgaatattgtatttcttcaa 543

                                                                       
Query: 365 acaagtccagctggtagtatttcttctgtttggtgtaatctgttggtgatgtttttcatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acaagtccagctggtagtatttcttctgtttggtgtaatctgttggtgatgtttttcatt 483

                                                                       
Query: 425 gtggttttcatttttaatatttctgtttatttcactttctttccttaactatgttactgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtggttttcatttttaatatttctgtttatttcactttctttccttaactatgttactgt 423

                                                                       
Query: 485 cttcttctctagatcctgagttgatttccttacttcagtctcctgcttgcttatatcctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttcttctctagatcctgagttgatttccttacttcagtctcctgcttgcttatatcctc 363

                                                   
Query: 545 ttttaagtcattgatcagttttacaagtaaacatttgaat 584
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttttaagtcattgatcagttttacaagtaaacatttgaat 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)