Query= MSMg01no449_p02.b1 MSMg01no449_p02.b1 CHROMAT_FILE:
MSMg01no449_p02.b1 PHD_FILE: MSMg01no449_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:42 2005
(490 letters)
>mm_chr1_35730122_35731011
Length = 890
Score = 839 bits (434), Expect = 0.0
Identities = 473/486 (97%)
Strand = Plus / Minus
Query: 5 gaattcattagataccgctgagcaaggagatgttttagctcaccttggggtgggcgtctt 64
||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gaattcattagatacagttgaacaaggagatgttttagctcaccttggggtgggcgtctt 631
Query: 65 tgtagaggagcagtctcaggctgcagtcatccaggaagagaaagctgtggttgatattct 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgtagaggatcagtctcaggctgcagtcatccaggaagagaaagctgtggttgatattct 571
Query: 125 atatacactatcatcatctattcccagaccaggccttgctcgcttcaaaacctgaccaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atatacactatcatcatctattcccagaccaggccttgctcgcttcaaaacctgaccaga 511
Query: 185 ggagggccatatggttcagtggatttgaggcactgggatctctaacatggccatgctcta 244
|||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||
Sbjct: 510 ggagggccatatggttcagtgggtctgaggcactgggatctctaatgtgggcatgctcta 451
Query: 245 gtcaacagcacacatccactcagggctccatctgctcctcacagcaggtacagtcctctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtcaacagcacacatccactcagggctccatctgctcctcacagcaggtacagtcctctg 391
Query: 305 cgggcttgacatactcgtctttccctgtagtgaactcctgcttttattgatgtctggatg 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 cgggcttgacatactcgtctttccctgtagtgaactcctgcttttactgatgtctggatg 331
Query: 365 ctggccctatttacctatgagagatggaggtacatgttcagaatacagcacaggtaggca 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctagccctatttacctatgagagatggaggtacatgttcagaatacagcacaggtaggca 271
Query: 425 agccccatctgtggaaataagtggcctggtcagcagatccccagagagaagaacagcaga 484
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 270 agccccatctgtggaaataaatggcctggtcagcagatacccagagagaagaacagcaga 211
Query: 485 tcatag 490
||||||
Sbjct: 210 tcatag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_p02.g1 MSMg01no449_p02.g1 CHROMAT_FILE:
MSMg01no449_p02.g1 PHD_FILE: MSMg01no449_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:42 2005
(527 letters)
>mm_chr1_35587330_35588256
Length = 927
Score = 905 bits (468), Expect = 0.0
Identities = 513/528 (97%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 1 tctggctagacacact-gccaaatgggtaatctccaggctaataagagaaacaagaagga 59
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 tctggctacacacactagccaaatgggcaatctccaggctaataagagaaacaagaagga 259
Query: 60 ccatgtctgagaaaggccacctaactcaaggttatcccttggcctccactccttgtacat 119
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 260 ccatgtctgagaaaggccatctaacccaaggttatcccttggcttccactccttgtacat 319
Query: 120 ctctcgccctaacactttgttaagaagtggtaaagcaagggatggcaagcaggggtaggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctctcgccctaacactttgttaagaagtggtaaagcaagggatggcaagcaggggtaggg 379
Query: 180 aagaggcacctgtgagagcaggtttaactgaagttggaaggagaattcaagcagtggttt 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 aagaggcacctgtgagagcaggtttaactgaagtcggaaggagaattcaagcagtggttt 439
Query: 240 tgttgtaacaatgtgtctgtgacttggggatgagagctgcagagacatagtaagctgtgt 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgttataacaatgtgtctgtgacttggggatgagagctgcagagacatagtaagctgtgt 499
Query: 300 gctggaggggcctttgatgagggggaggagagagagcaaaaggctgacaactagtaagcc 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 gctggaggggcctttgatgagggggaggggagagagcaaaaggctgacaactagtaagcc 559
Query: 360 tctgatagttctacagtcatgtaaccttcttcctgcatcacagtcctcctaaggtacctt 419
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 tctgatagttctacagccatgtaaccttcttcctgcatcatggtcctcctaaggtacctt 619
Query: 420 tctcttctccataagttatgaactgtgtgaccctatgtctaggttatccgggaatagcat 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 tctcttctccataagttatgaactgtgtgaccctatgtctaggttatctgggaatagcat 679
Query: 480 ctatgctctttgtgtcacattaataacatttctctcctcttttgggtt 527
||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 680 ctatgctctttgtgtcatattaataacacttctctcctcttttgggtt 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
