Query= MSMg01no450_b16.b1 MSMg01no450_b16.b1 CHROMAT_FILE:
MSMg01no450_b16.b1 PHD_FILE: MSMg01no450_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:54 2005
(631 letters)
>mm_chr1_110747297_110748328
Length = 1032
Score = 882 bits (456), Expect = 0.0
Identities = 474/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 153 tttacaaggattgccttggtaatggtttctattcacagcaattaaaccctaactaggaca 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tttacaaggattgccttggtaatggtttctattcacagcaattaaaccctaactaggaca 973
Query: 213 gaagacaaaataaaaaccaaggccttgttgggcatcccaaagagagatcacagaaggaca 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 gaagacaaaataaaaaccaaggccttgttgggcatcccaaagagagatcacagaaggaca 913
Query: 273 ggttgaactgtgtgtagtggtgcataccttttgctctagcactcaaaagactgggacaaa 332
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 912 ggttgaactgtgtgtagtggtgcataccttttgctctagcactcaaaaggctgggacaaa 853
Query: 333 cagatatatgtgagattaaatctggctacctggtctactattgtatatttaccaatttcc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cagatatatgtgagattaaatctggctacctggtctactattgtatatttaccaatttcc 793
Query: 393 aggtcatacagctttacatattgaggcaatcacccacccacccctaaaaacagaggtata 452
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 792 aggtcatacagctttacatattgaggcaatcacccacccgcccctaaaaacagaggtata 733
Query: 453 agagggatgggcaaagagggatgattggagagtagaagaagaagaagaaaaaaaagacaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agagggatgggcaaagagggatgattggagagtagaagaagaagaagaaaaaaaagacaa 673
Query: 513 attgaa-gataaagtgactgagtgtggagtccttttggcacatctccctaatactaagca 571
| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 672 agtgaaagataaagtgactgagtgtggagtccttttggcacatctcgctaatactaagca 613
Query: 572 gcatgctatcccttgtgaaccttcactctcccatcacctttctgcctaccttcatcagac 631
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 612 gcatgctatcccttgtgaaccttcactttcccatcacctttctgcctaccttcatcagac 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space: 634662
Effective search space used: 634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_b16.g1 MSMg01no450_b16.g1 CHROMAT_FILE:
MSMg01no450_b16.g1 PHD_FILE: MSMg01no450_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:54 2005
(533 letters)
>mm_chr1_110707892_110708824
Length = 933
Score = 822 bits (425), Expect = 0.0
Identities = 514/553 (92%), Gaps = 25/553 (4%)
Strand = Plus / Plus
Query: 1 caggactgcacagagaaatccagtctcggaaaaacaaacaaa--------caaacaaa-a 51
||||||||||||||||||||||||||| |||||| ||| ||| ||| ||| |
Sbjct: 186 caggactgcacagagaaatccagtctc-gaaaaataaataaataaataagtaaataaata 244
Query: 52 aataaataaat--------aaaacaaaaacaaaaacaggcaaacaaacaaacaaacaaaa 103
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aataaataaatcaaaaacaaaaacaaaaacaaaaacaggcaaacaaacaaacaaacaaaa 304
Query: 104 aaccattcctttttaaaaattgctgtattctgtatcagaaaagaatataaacagtgtaag 163
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aa-cactcctttttaaaaattgctgtattctgtatcagaaaagaatataaacagtgtaag 363
Query: 164 cagagataaacatatttgagtgtgctaagataaaaaatgcaagtcgggttccgggactcc 223
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagagataaacatatttgagtgggctaagataaaaaatgcaagtcgggttccgggactcc 423
Query: 224 gcagagag-caggctgcacgggtgagggtgtggaatacagaggccagcagtttctggag- 281
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 424 acggag-gacaggctgcacgggtgagggtgtggaatacagaggccagcagtttctgg-ga 481
Query: 282 caggcaagagccacagagcttctgaggcggcgccattttcggctccagacaaccggccaa 341
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 482 caggcaagagccacagagcttctgaggcggggccattttcggctccagacaaccagccaa 541
Query: 342 cttcctggtgagagcacaggggtccgcccagcccgagaggtttctgcctcaggctcttcg 401
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 542 cttcctggtgagagcacaggggtctgcccagcccgagaggtttctgcctcaggctcttcg 601
Query: 402 ggagccaccttggttc-cgggactccacagagggcaggctgcacgggtgagggtgtggaa 460
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggagccaccttg-ttaacgggactccacagagggcaggctgcacgggtgagggtgtggaa 660
Query: 461 tacagaggccagccgtttctgggacaggcgagagccacagaacttctgaggcggcgccat 520
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 661 tacagaggccagcagtttctgggacaggcgagagcaacagaacttctgaggcggcgccat 720
Query: 521 tttcggctccaga 533
|||||||||||||
Sbjct: 721 tttcggctccaga 733
Score = 188 bits (97), Expect = 1e-51
Identities = 118/125 (94%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 215 cgggactccgcagagagcaggctgcacgggtgagggtgtggaatacagaggccagcagtt 274
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cgggactccacagagggcaggctgcacgggtgagggtgtggaatacagaggccagcagtt 677
Query: 275 tctggag-caggcaagagccacagagcttctgaggcggcgccattttcggctccagacaa 333
||||| | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 678 tctgg-gacaggcgagagcaacagaacttctgaggcggcgccattttcggctccagacaa 736
Query: 334 ccggc 338
|||||
Sbjct: 737 ccggc 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
