BAC Information

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BAC

Clone NameMSMg01-450C23
Chromosome1 (Build37)
Map Location 70,073,948 - 70,074,522
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450C23.T7 (MSMg01no450_c23.b1)MSMg01-450C23.TJ (MSMg01no450_c23.g1)
ACCAG537975AG537976
length780759
length of high quality
(start - end)
575 (76 - 650)402 (74 - 475)
definitionCHROMAT_FILE: MSMg01no450_c23.b1 PHD_FILE: MSMg01no450_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:01 2005CHROMAT_FILE: MSMg01no450_c23.g1 PHD_FILE: MSMg01no450_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATGCGCGGAA
TTCCCAAAGGNCTTTCGTGACAGGTCAGAGCCTAGAAAATGATATAGAAA
TCAAAACCCATGATATTATTTTCTTCCTTTCATATTTGGAAGTCAGCAAT
ATGAGAACAATACAAGGATGCCACTTGATGGGTTTCCCAAAAAAATTAAA
GAATTTTCATCAGCGCCTACAGTATAAGTAAGAGACACAAGTAGGGGGCA
AGAAGGCTTAAAATAAATAAGTTTACATTGAATCAGATAGTAAGTGTTTT
TTACAAACATAAACTATTAAGTACTTATTTAACTATTTAGTTCATTTCAT
AATTATATGTCTTATCCACTTTGTGGAAAATAAGCCATATCATTTGATTT
ATTATTTTGAATAATGAAAAATCTCCTTTTAAGTGGCACAATTTGAGTGA
TTATTAAAAGAATTTACAGGCCCTTCATGCTGATAAGTGAATTATTATAA
TTCATCACATTATATCAACTTTAGAACAGCATCTGTGATTAATCTGGAAA
AATGTGTAGATTACTTACATTACCAAAATGATTGCATCCATCACAGTATA
GTAACTTAATGGGATTCCATTTTAGGAATGCATAATAATTAATTATCTAA
GTCATTAGAACAATTAGCATAGATATGTATCTTCACTATCAAGGATAATT
TCAATGCTATAAATTGGATTTTAGATTAAGCATTTAAAATTGAAAAGCGA
AAAATTGTAATAACCTGCGGATACTGTGCC
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCCCCTAACTGCATGGTACTCGCATAGCCACAGACAA
GTAGACCAATGGAATAGAATTGAAGATCCAGAGACGAACCCACACACCTA
TGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAATAG
ACAGCATTTTCAACAAATGGTGCTGACACAGCTGGCGGTTATTGTGTAGA
AGAATGAGAATTGACCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAA
GTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAATCTTATAGAGG
AGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGATAAAATTCCT
GAATGGAACAGCAATGGCTTGCGCTGTAAGATCGAGAATCAATAACTGCT
ATCTCCTAACGTTGTATAGCTTCTGCAAGGCTAAAGACCCCGTCTATAAT
ACAAAAATACCTTTTCCCTATTGTCAAAGGATCCTTTACTATTCTTACTC
CTATTGCCGATTTATATCCACCTCCATTCTTTGCTCACTATCTTTTCACG
TTTCTTCTCGTTTTTTCCCTTTTCCATCAACTTCCTTTATATCTTCTGTT
CTACCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_c23.b1 MSMg01no450_c23.b1 CHROMAT_FILE:
MSMg01no450_c23.b1 PHD_FILE: MSMg01no450_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:01 2005
         (575 letters)



>mm_chr1_70073748_70074722
          Length = 975

 Score = 1050 bits (543), Expect = 0.0
 Identities = 567/575 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagcctagaaaatgatatagaaatcaaaacccatgatattattttcttcctttcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cagagcctagaaaatgatatagaaatcaaaacccatgatattattttcttcctttcatat 716

                                                                       
Query: 61  ttggaagtcagcaatatgagaacaatacaaggatgccacttgatgggtttcccaaaaaaa 120
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 715 taggaagtcagcaatatgagaacaatactaggatgccacttgatgggtttcccaaaaaaa 656

                                                                       
Query: 121 ttaaagaattttcatcagcgcctacagtataagtaagagacacaagtagggggcaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttaaagaattttcatcagcgcctacagtataagtaagagacacaagtagggggcaagaag 596

                                                                       
Query: 181 gcttaaaataaataagtttacattgaatcagatagtaagtgttttttacaaacataaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcttaaaataaataagtttacattgaatcagatagtaagtgttttttacaaacataaact 536

                                                                       
Query: 241 attaagtacttatttaactatttagttcatttcataattatatgtcttatccactttgtg 300
           ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 535 attaagtacttaaataactatttagttcatttcataattgtatgtcttatccactttgtg 476

                                                                       
Query: 301 gaaaataagccatatcatttgatttattattttgaataatgaaaaatctccttttaagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaaaataagccatatcatttgatttattattttgaataatgaaaaatctccttttaagtg 416

                                                                       
Query: 361 gcacaatttgagtgattattaaaagaatttacaggcccttcatgctgataagtgaattat 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 415 gcacaatttgagtgattattaaaagaatttacaggcccttgatgctgataagtgaattat 356

                                                                       
Query: 421 tataattcatcacattatatcaactttagaacagcatctgtgattaatctggaaaaatgt 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tataattcatcacattaaatcaactttagaacagcatctgtgattaatctggaaaaatgt 296

                                                                       
Query: 481 gtagattacttacattaccaaaatgattgcatccatcacagtatagtaacttaatgggat 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 295 gtagattacttacattaccaaaatgattgcatccatcacagtaaagtaacttaatgggat 236

                                              
Query: 541 tccattttaggaatgcataataattaattatctaa 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tccattttaggaatgcataataattaattatctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)