BAC Information

Click to search

BAC

Clone NameMSMg01-450D09
Chromosome1 (Build37)
Map Location 29,116,331 - 29,116,861
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450D09.T7 (MSMg01no450_d09.b1)MSMg01-450D09.TJ (MSMg01no450_d09.g1)
ACCAG537995AG537996
length766734
length of high quality
(start - end)
421 (49 - 469)536 (83 - 618)
definitionCHROMAT_FILE: MSMg01no450_d09.b1 PHD_FILE: MSMg01no450_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:03 2005CHROMAT_FILE: MSMg01no450_d09.g1 PHD_FILE: MSMg01no450_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTCGGACTGTACCCCATTTTTCAATAGAGTTATTTGA
TTTTCTGGAGTCCATCTTAAATTTTGCTGACAGGACCCTGACATAGCTCT
CTCTTGTGAGAGAGAGCCAATGCCTGGCACAGAAGTGGATGATCACAGTC
ATCTATTGAATGGAACACCGGACCCCTAATGAAGGAGCTAGAGAAAGTAC
CCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGAGGAACAACAATATGAA
CTAACCAGTATCCCCCATAGCTGTGTCTCTAGTTGCATATGTGTCAGAGG
ATTGCCTAGGTGGCCATCATAGGTGGGGAGAGGCCCTTGGTCTAGCGAAG
ATCATATGCCCCAGTACAGGGGAATGTCAGGGCCAGGAAATAGGATGGGT
GGGTTGGGGAGAAGGGCAGGGCGAGCCCTTTTTCTTTTTTCCTCTTCTCT
TCTTCCTTTCCTCTTTTTCCTTTCTTCCTTTCCTTTCTTTCTTCCTCTCT
CTTTTCTTCCATTTTTCCCTTCCTTCCTTCTTCCCCTCTTTTGTCCTCCC
TTTATCTAGTCTTTTCCTTCTTATATAATATTTATCCACCTCTTTCACAT
TTCTTTTCTTTCCCTCTTTTCTCTCCCCACCTTGTTTTACGCCTACCTTT
CTCCGCTTCTGTTCCTCCCTATTTTTCCCTTTATATATTTTTCTTTCTTT
TACCCCTCCATCTCCG
TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCAAGTAAAGGGTGATAAATC
AATGAGAGTTTTGGATGAGTTATAGTAGAAGAAATGACTTTGAGAGTGCA
GCTCCATCACAAACAAGCAAATGAATCAAAACAAAACAAAACAAAACGAA
CAAGAAACCCAACAAGTCAGCATGGAGATTGAATCTTTAGCGTTCCCAAC
ACATTTAAAAGGCAGTTGTAGCATCAGAGTCTTCTCTACCCACAGTGTGT
GTTTCCCATTTGTAGAAACTGTTTTAAGGAGTCATAAATGTAGTGAGACT
TTGACTTGTTCAAAATAATTTTTTGTGAGTTTCATGATATACCCCCTTAC
TTCCAGAAGGAAATGCTTTGAGGTCACAGTGTATATATTCATGCTTCTTT
CTATGTTTATTAACAAATTCCTCAGTAAAACTCCTGTCAGTTAAGCTTTC
CATGACTCACTCCTTTGCTTCTTGTGATGGCATTACTTTTTCTAAAGACA
GGAGAAAAAAATTGATCGAGTCAAATCTGTTCATATGTAATAGATCAAAA
CTCTTGGGAGAGAGCTGGCATAACAGGCTCCACAAAATGACCAAGAGTAT
GTCACTCCAGTTGCTATGGATTACTCAGGATTTAGAAGTAAAAAGCAAAG
CTAAAAAGACAAAAGAACAATTGCAGTGTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_d09.g1 MSMg01no450_d09.g1 CHROMAT_FILE:
MSMg01no450_d09.g1 PHD_FILE: MSMg01no450_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:03 2005
         (536 letters)



>mm_chr1_29116126_29117061
          Length = 936

 Score =  955 bits (494), Expect = 0.0
 Identities = 524/540 (97%), Gaps = 13/540 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaagggtgataaatcaatgagagttttggatgagttatagtagaagaaatgactttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 206 agtaaagggtgataaatcaatgagagttttggatgagttatagtagaagacatgactttg 265

                                                                       
Query: 61  agagtgcagctccatcacaaacaagcaaatgaatcaaaacaaaacaaaacaaaacgaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||
Sbjct: 266 agagtgcagctccatcacaaacaagcaaatgaatcaaaacaaaacaaaac-----gaaca 320

                                                                       
Query: 121 agaaacccaacaagtcagcatggagattgaatctttagcgttcccaacacatttaaaagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 agaaacccaacaagtcagcatggagattgaatctttagcgttcccaacacgtttaaaagg 380

                                                                       
Query: 181 cagttgtagcatcagagtcttctctacccacagtgtgtgtttcccatttgtagaaactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 cagttgtagcatcagagtcttctctacccacagtgtgtgtttcccatttgtagaaactg- 439

                                                                       
Query: 241 ttt---aaggagtcataaatgtagtgagactttgacttgttcaaaataatttttt-gtga 296
                 ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 ---gggaaggagtcataaacgtagtgagactttgacttgttcaaaataatttttttgtga 496

                                                                       
Query: 297 gtttcatgatatacccccttacttccagaaggaaatgctttgaggtcacagtgtatatat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtttcatgatatacccccttacttccagaaggaaatgctttgaggtcacagtgtatatat 556

                                                                       
Query: 357 tcatgcttctttctatgtttattaacaaattcctcagtaaaactcctgtcagttaagctt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcatgcttctttctatgtttattaacaaattcctcagtaaaactcctgtcagttaagctt 616

                                                                       
Query: 417 tccatgactcactcctttgcttcttgtgatggcattactttttctaaagacaggagaaaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tccatgactcactcctttgcttcttgtgatggcattactttttctaaagacaggagaaaa 676

                                                                       
Query: 477 aaattgatcgagtcaaatctgttcatatgtaatagatcaaaactcttgggagagagctgg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaattgatcgagtcaaatctgttcatatgtaatagatcaaaactcttgggagagagctgg 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)