BAC Information

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BAC

Clone NameMSMg01-450I04
Chromosome1 (Build37)
Map Location 167,904,715 - 167,905,235
singlet/doubletsinglet
Overlap genePou2f1
Upstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
Downstream geneLOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450I04.T7 (MSMg01no450_i04.b1)MSMg01-450I04.TJ (MSMg01no450_i04.g1)
ACCAG538223AG538224
length744755
length of high quality
(start - end)
42 (266 - 307)522 (76 - 597)
definitionCHROMAT_FILE: MSMg01no450_i04.b1 PHD_FILE: MSMg01no450_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:28 2005CHROMAT_FILE: MSMg01no450_i04.g1 PHD_FILE: MSMg01no450_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCCCTTATAATTTGCGGGCGCGAAANGAANCACAATTTCGAATTTG
CCCGNGGNAANNANAANGTTTCTNTACTGCGAGGANNGNNNGGAGCACAG
GAGGCAGGGNANGCAGGCCCCAATACACCCCACACAGNNNCAAACAAAAC
AAAGAAGAACACAGAAANGGGAAGAAAACACAAACCCAACAAGNACCCGG
GGNGGACCCAAAGGAAGCCGACGGCNCCCNAAAGCGGGCCACAGCCAACC
CGGGCGGTTTTTTTAGCGCTCTTGGGGGAGGCACCGGTTTCAGGTAACTT
GCTTGGTCCCCGGNCNCCTAATTTTTTTTTTTTCAACCGGAACGAGACCN
AAGCGGGGCCGCAAACTCCACCCCCGCAACCCCAAGCGCCGAAGAAGCGA
ACAAAGACGGAGACCAGGNCCCCCCACCAAGACGAAGACAGAAGAAACCC
AGCGCAGCGCCAGCAGGCCGAGCCAGGAGCCAACGAGCACCGAAAGGAAG
CGCCACGCAACACAAACCACCAAAAAGCCGCGCAAAGAGGCGAGCAGGAG
GCAAAGACAACCACAGGCCAAGGCCCCGCAACAAGAACGGCACAACCGCG
CGACAGCCACCGCGCCGCGCGCCCCAGCACCACACCCCCCCAGAACCGCA
ACCGGCACGGCAGACAAACTCTTTTTTTTTGTCCCGTTCTTTATTTCGGT
TGTTTCTTCCTTTCCTGCTCTGTTTTCCTTATATCTTCAGCTCA
GACGATGATAGTGGTAGGCCGGGNGGNCGCCTGTTTCAAAACAGGAGGTG
AACTATAGAAGTTGCAGAAAAAGTCCTCACCATAGTTCTTATTTTGTATT
TGCCACACTTATTTTTGGGAGACTTCTTAGTAACTGGTCATGAAGAATTC
TCTGTTTTCTTCACAGCTAGTATTTATTATTTAAAAAAGCAAACAGATAA
ATAAATAAAACTTTAAAGGATGTAATTTTCTTTTAACTTTCCTCCTCACA
AATAGTATTCAGTATCTGTGTAAACACTCTTAAAGGCCAGGTGTGTGATC
ATAAGTCCACATCAGGTTTGTTCGTTATCTTTTCTCTAAAGGAATAGCTA
GTCAATGTTCTGGATTCTTTAAATTGAGAAGTGAAATGGGTATTATGTAC
ATGCTTATAGAACAAGGGAAAACAAGTCTCAGCACGTAGGTAATTAGCAA
AGTGTTAAGTAAGACTTTGTGATCTAAGCCTTGAGAAGAATTCTTTTGAA
GAAGTAATATTTTTTAGGATCCCCTGTTAGTGTCCTTACGATCAGATCCT
TTGCAGACATTTTGTAAAACCTATTCTTAGCAGTTCTGTGAATAGGCGAG
GACCTGATTTTGGATCTCTAGAGCTCCCACAGGGCTGTTTTGGACTTGGT
ATATATACCTTTTTTTTCTTCAGTGAACCGCCAGCGGATACTGGAATCCC
CTGTACTTCTTAGATACATCCCTGCCCTTCAACCATATTGAATACCGGTA
TTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_i04.g1 MSMg01no450_i04.g1 CHROMAT_FILE:
MSMg01no450_i04.g1 PHD_FILE: MSMg01no450_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:28 2005
         (522 letters)



>mm_chr1_167904646_167905567
          Length = 922

 Score =  965 bits (499), Expect = 0.0
 Identities = 516/523 (98%), Gaps = 4/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaccatagttcttattttgtatttgccacacttatttttgggagacttcttagtaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctcaccatagttcttattttgtatttgccacacttatttttgggagacttcttagtaact 531

                                                                       
Query: 61  ggtcatgaagaattctctgttttcttcacagctagtatttattatttaaaaaagcaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggtcatgaagaattctctgttttcttcacagctagtatttattatttaaaaaagcaaaca 471

                                                                       
Query: 121 gataaataaataaaactttaaaggatgtaattttcttttaactttcctcctcacaaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gataaataaataaaactttaaaggatgtaattttcttttaactttcctcctcacaaatag 411

                                                                       
Query: 181 tattcagtatctgtgtaaacactcttaaaggccaggtgtgtgatcataagtccacatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tattcagtatctgtgtaaacactcttaaaggccaggtgtgtgatcataagtccacatcag 351

                                                                       
Query: 241 g--tttgttcgttatcttttctctaaaggaatagctagtcaatgttctggattctttaaa 298
           |   |||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gcacttg--cgttatcttttctctaaaggaatagctagtcaatgttctggattctttaaa 293

                                                                       
Query: 299 ttgagaagtgaaatgggtattatgtacatgcttatagaacaagggaaaacaagtctcagc 358
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 292 ttgagaagtgaaatgggtattatgtacatgcttatagaacgagggaaaacaagtctcagc 233

                                                                       
Query: 359 acgtaggtaattagcaaagtgttaagtaagactttgtgatctaagccttgagaagaattc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acgtaggtaattagcaaagtgttaagtaagactttgtgatctaagccttgagaagaattc 173

                                                                       
Query: 419 ttttgaagaagtaatattttttaggatcccctgttagtgtccttacgatcagatcctttg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttttgaagaagtaatattttttaggatcccctgttagtgtccttacgatcagatcctttg 113

                                                      
Query: 479 cagacattttgtaaaacctattcttagcagttctgtgaatagg 521
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 cagacattttgtaaaacctattcttagtagttctgtgaatagg 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)