BAC Information

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BAC

Clone NameMSMg01-450N11
Chromosome1 (Build37)
Map Location 131,994,550 - 131,994,914
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450N11.T7 (MSMg01no450_n11.b1)MSMg01-450N11.TJ (MSMg01no450_n11.g1)
ACCAG538471AG538472
length770729
length of high quality
(start - end)
466 (73 - 538)369 (80 - 448)
definitionCHROMAT_FILE: MSMg01no450_n11.b1 PHD_FILE: MSMg01no450_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:54 2005CHROMAT_FILE: MSMg01no450_n11.g1 PHD_FILE: MSMg01no450_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCATACAGGATCCGCG
GAATTCCTTAATTCATAACATTTGACCTTAGNACAAGGAGATAGAAATGG
ATCAATTCTCATTCTTCTACCTGATAACCACCACTTGTGCCAGCACCATT
TGTTGAAAATGCTGTCTTTTTTCAACTGGATGGTTTTTGCTCCCTTGTCA
AAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGCCTTCAATTCT
GTTCCATTGGTCTACTTGTCTGTCACTATTCCAGTACCATGCAGTTTTTA
TCACAATTGCTCTGTAGNATAGNTTTAGGTCCAGCATGTTGATTCCACCA
GAGGTTTTTTTGTCTTGAGAAGAGTTTTTGCTATTCTAGATTTTTTGTTA
TTCCAGATGAATCTGTGGATTTCCCTTTCTAATTCGTTGAAGAATTGAGT
TGGAATTTTGATGGGGTTTGCATTGAATCTGTAGATTGCTTTTGGCAAGA
TAGCCATTTTTACAATGTTGATCCTGCCAATCCATGAGCATGGGAGATCT
TTCCCTCTTCTGACATCTTCTTTAATTTCTTTCTTCAGACACTTGAAGTT
CTTATCACACAGATCTTTCACTTTCCTATAGTCCCGCCAAGGGAACCTAT
ATTATTTTTTTTATATTGACGCTGCGTTCTCCCTAATTTCTTTTCTACGC
CCGTTCATCCTTTTCCGATCCTACAGTCCTTCCACCTTGTTTGACTCATC
TCTATATTCCACAATTTCCG
NNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGTTCATTGTCATAGACTG
TGCTCTTAAGACCACATACAGCAGCCCAGCATGGTGGCTAGGGCCACAGT
GTGTTTGTCTGGAGAGCAAACACACACAAAAGGTATGACATCAACCCTAT
CGGTGTTGAGTATCTTCTTAGTATCTTAATTTTTTCACCTTAGTTCTCTT
AACAATCTGTATAATTCAGACCTTAAATAATACAGATATGCTAAAAAACA
AAATCCTATAATTTACACTCTACTCACATATATTTACTTTTGATCCTAAT
GAAGCCAGACATGTGTATGTGTTTGCTGGAGAGAGAGAAAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_n11.g1 MSMg01no450_n11.g1 CHROMAT_FILE:
MSMg01no450_n11.g1 PHD_FILE: MSMg01no450_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:54 2005
         (369 letters)



>mm_chr1_131994416_131995184
          Length = 769

 Score =  652 bits (337), Expect = 0.0
 Identities = 358/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttcattgtcatagactgtgctcttaagaccacatacagcagcccagcatggtggct 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 499 catgttcattgtcatagactgtgttcttaagaccacatacagcagcccagcgtggtggct 440

                                                                       
Query: 61  agggccacagtgtgtttgtctggagagcaaacacacacaaaaggtatgacatcaacccta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 439 agggccacagtgtgtttgtctggagagcaaacacacacaaaaggtatgatgtcaacccta 380

                                                                       
Query: 121 tcggtgttgagtatcttcttagtatcttaattttttcaccttagttctcttaacaatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcggtgttgagtatcttcttagtatcttaattttttcaccttagttctcttaacaatctg 320

                                                                       
Query: 181 tataattcagaccttaaataatacagatatgctaaaaaacaaaatcctataatttacact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 tataattcagaccttaaataatacagatatgctaaaaaacaaaatcctataatttatact 260

                                                                       
Query: 241 ctactcacatatatttacttttgatcctaatgaagccagacatgtgtatgtgtttgctgg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctacacacatatatttacttttgatcctaatgaagccagacatgtgtatgtgtttgctgg 200

                                                                       
Query: 301 agagagagaaagagagagagagagagagagagagagagagagagagagagagagagagag 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 140

                
Query: 361 agaga 365
           |||||
Sbjct: 139 agaga 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 115
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)