NGGAGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTAGGATGAAAATCAATGATCATAGAATTAAAAGAAAAT
ATGGAAACAGAAAAAGCTAGTACTATTTCCAGCTGCTAGAATGATTGCAG
ATGATAATGCCTAATTTTCTTGCATAAAATTTAAAACTTTGAAAGAAATT
ATGTCAACCTTAGTAGTCTCTCACCTTTTTGTTCTTACATGAAAGTAGTT
ACTAAGGACTGTTGTCTTCTGTACTAGGAAACTACAGGAACTGTGCCCAC
TTACCCATGAAGAACAAGCTGCATAACACCTCTAAGGAAATATGCTTTTG
TTTGGTGTTTAGGTTTTGTTTTATGGAGGCAGGGATTTGGAATAATGATC
CAGAATTCAGTAAATTTATGTACATTTAAGGATTTCTAAAGAAATATGAA
AATTGATCAAAGCCTTGCTTATATAACTTTAGTAAATAAAAGACTGGGTT
CTGTATCTGGTTGGGAGAAGGTAAAAGAATGTGAAGGAGGAAGACAAAAG
AATGAACGGGAACTAGGGATAAAGGAGAGGAAGGAAGAAAGATAAGTATC
CTTGGGCAAAGAAAGAGTACTTGAACATACAGCTTTTACCATCTACTGAG
TCATTGAATTAGCATAGCTCCCATTCCTGCCTTTCTCAGGACCCTCTTCC
CACTGCAGCAGTACCTCTGAATATTGTTTAATAGGAAATAACAGAAAN

ACTCCTACCCCATAATAGAAANAACGCCGTATCTCCCCTCCCACCCGAAG
ACAGAAATAGAGAATTACCAAGAGGAAAATCGCACCACAGCCTAATTCCT
TTCACTCGCCTACTACCCACACATTCTTATCCCTCTCATCCATGGAACGC
GACCGTCAAACACCCATACCTTTTCACATACCTACCTCCTCACCGATACT
TATTGTTCTTCCTCTTGCCTGCTTGTGTCAAGCGACATCCTGTTAGCTCT
GTTAGTACTCACACTTCACCGCTTCTTTCCGACCCCTTTACCCCGCCTTT
ATTATATTCTACGTCCCTACACCTCAATAGCCTCAACCACGTATTGCAGA
CAAAACACTGCAGCCATGCCCAACCAGCCATATGATAAACTAACGGTAAC
TTTATACCTACACCACACATAACCACGATTATACCGCTTACCACCATGCC
AAATCTCTATCACCCCATCCCCCGCCCAAATCCAATCCTACCCGCTGAAT
CGATGAAACACACCACGTACACACCCCTTCTCCGTATTTCTCCATTGATT
AGTATTCTCTTCGATGACTGCACATTATCCTAAGCGGTGCAGGACTGACC
CGCCGTATCTCGTCATCCTTCCCATAGCCATCTATTTATTTTATATTTCN
CTACGTCCCCTCCTCTCCATCCTTTTTTTCACTTACTTTCTTTGTAATTC
TCCTATTTATTGTTCCCTGTATCATACCCGCATATCTTCAACCCCTTTTT
GTTTAATCGGGGGGCGGGTCCTGTAAATGAATTAAACTTCCATCGNGATN
TTTTTAGATCNNCCGCTTTATTTACGAATTTTTTACTAATACGGTNNTTN
CCNACACTGAATAGTACCAAACAAGATAATTCAGTAATTAAGTTCCCCAA
TGCTA

Query= MSMg01no451_a09.b1 MSMg01no451_a09.b1 CHROMAT_FILE:
MSMg01no451_a09.b1 PHD_FILE: MSMg01no451_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:08 2005
         (689 letters)



>mm_chr1_105719393_105720481
          Length = 1089

 Score = 1311 bits (678), Expect = 0.0
 Identities = 684/686 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaggatgaaaatcaatgatcatagaattaaaagaaaatatggaaacagaaaa 63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 ggaattcttaggatgaaaatcaatgatcatagaattaaaagacaatatggaaacagaaaa 263

                                                                       
Query: 64  agctagtactatttccagctgctagaatgattgcagatgataatgcctaattttcttgca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agctagtactatttccagctgctagaatgattgcagatgataatgcctaattttcttgca 323

                                                                       
Query: 124 taaaatttaaaactttgaaagaaattatgtcaaccttagtagtctctcacctttttgttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaatttaaaactttgaaagaaattatgtcaaccttagtagtctctcacctttttgttc 383

                                                                       
Query: 184 ttacatgaaagtagttactaaggactgttgtcttctgtactaggaaactacaggaactgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacatgaaagtagttactaaggactgttgtcttctgtactaggaaactacaggaactgt 443

                                                                       
Query: 244 gcccacttacccatgaagaacaagctgcataacacctctaaggaaatatgcttttgtttg 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 gcccacttacccatgaagaacaagctgcgtaacacctctaaggaaatatgcttttgtttg 503

                                                                       
Query: 304 gtgtttaggttttgttttatggaggcagggatttggaataatgatccagaattcagtaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgtttaggttttgttttatggaggcagggatttggaataatgatccagaattcagtaaa 563

                                                                       
Query: 364 tttatgtacatttaaggatttctaaagaaatatgaaaattgatcaaagccttgcttatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttatgtacatttaaggatttctaaagaaatatgaaaattgatcaaagccttgcttatat 623

                                                                       
Query: 424 aactttagtaaataaaagactgggttctgtatctggttgggagaaggtaaaagaatgtga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aactttagtaaataaaagactgggttctgtatctggttgggagaaggtaaaagaatgtga 683

                                                                       
Query: 484 aggaggaagacaaaagaatgaacgggaactagggataaaggagaggaaggaagaaagata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggaggaagacaaaagaatgaacgggaactagggataaaggagaggaaggaagaaagata 743

                                                                       
Query: 544 agtatccttgggcaaagaaagagtacttgaacatacagcttttaccatctactgagtcat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtatccttgggcaaagaaagagtacttgaacatacagcttttaccatctactgagtcat 803

                                                                       
Query: 604 tgaattagcatagctcccattcctgcctttctcaggaccctcttcccactgcagcagtac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgaattagcatagctcccattcctgcctttctcaggaccctcttcccactgcagcagtac 863

                                     
Query: 664 ctctgaatattgtttaataggaaata 689
           ||||||||||||||||||||||||||
Sbjct: 864 ctctgaatattgtttaataggaaata 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)