Query= MSMg01no451_j24.b1 MSMg01no451_j24.b1 CHROMAT_FILE:
MSMg01no451_j24.b1 PHD_FILE: MSMg01no451_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:56 2005
(658 letters)
>mm_chr1_40401993_40403048
Length = 1056
Score = 1214 bits (628), Expect = 0.0
Identities = 651/668 (97%), Gaps = 17/668 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagagagagttctggagttaagactttctgaggactgtcttctagaaggtaatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggaattcagagagagttctggagttaagactttctgaggactgtcttctagaaggtaatt 252
Query: 64 caagctgtgagcagctcaggtgtccttaaaggagttgagaccagaaaacagatggttcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caagctgtgagcagctcaggtgtccttaaaggagttgagaccagaaaacagatggttcag 312
Query: 124 aagtgaaggcagaggagacaactgtgaagcattggaagattaagttgttaggctgtgtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagtgaaggcagaggagacaactgtgaagcattggaagattaagttgttaggctgtgtgg 372
Query: 184 tgaagttcagtaggatgatgagagagtggttgactggaatggtctcctggtttcatgtgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgaagttcagtaggatgatgagagagtggttgactggaatggtctcctggtttcatgtgt 432
Query: 244 gtgtgtgtgatctaatagg-------------ctacccggctttactcctgaatagtaaa 290
||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 433 gtgtgtg--atctaataggtggtgacctttggctacccggctttactcctgaatagtaaa 490
Query: 291 ctgaagagctttacagaacgtggcgatattttgggcatcctgatgtcacactcttgactt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctgaagagctttacagaacgtggcgatattttgggcatcctgatgtcacactcttgactt 550
Query: 351 ttgacttttcttgaccaatgttttggaaggtcttctcttcctgtcattacattagtgtag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgacttttcttgaccaatgttttggaaggtcttctcttcctgtcattacattagtgtag 610
Query: 411 gatttctgtggttctaactcaatccttgtgggtgtgatttcttatcagaggaagttgagt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gatttctgtggttctaactcaatccttgtgggtgtgatttcttatcagaggaagttgagt 670
Query: 471 atggaagaaggatccctaacatcacgtatccaaagaacaactccattgaagttccacttg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atggaagaaggatccctaacatcacgtatccaaagaacaactccattgaagttccacttg 730
Query: 531 gtaagtgaaactgttggagctgtccagttaccataggtaaagcttgctgcacctacttat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtaagtgaaactgttggagctgtccagttaccataggtaaagcttgctgcacctacttat 790
Query: 591 ttcaatggatgcattaaaagatcaaggtagagccccccccccccccggtccaatttccaa 650
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 791 ttcaatggatgcattaaaagatcaaggtagagcccccccccccc--ggtccaatttccaa 848
Query: 651 ctctggaa 658
||||||||
Sbjct: 849 ctctggaa 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1056
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1046
Effective search space: 677808
Effective search space used: 677808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_j24.g1 MSMg01no451_j24.g1 CHROMAT_FILE:
MSMg01no451_j24.g1 PHD_FILE: MSMg01no451_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:56 2005
(638 letters)
>mm_chr1_40598252_40599289
Length = 1038
Score = 650 bits (336), Expect = 0.0
Identities = 366/380 (96%), Gaps = 7/380 (1%)
Strand = Plus / Minus
Query: 5 taagaagactgtagaagatcagagacggacagaggaggcttgttctgcatcaatggatgg 64
||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 380 taagaagactgtaaaagatcagagacagacagaggaggcttgttcttcatcaatggatgg 321
Query: 65 aatctgctaaggctttgcactaaagcacaagttacgtgtgaccctcctctggacttcact 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 aatctgctaaggctttgcactaaagcacaagttacgtgtggccctcctctggacttcact 261
Query: 125 gtaagagtccccctttgggaatgaagaatattgataatttatgaacagtctccct----- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtaagagtccccctttgggaatgaagaatattgataatttatgaacagtctccctctgta 201
Query: 180 --ctgtttccttcccaagcatgaagccctaaatttaatccctggagcacatgtaaaaagc 237
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 200 gactgtttccttcccaagcatgaagccctaaatttaatccccggagcacatgtaaaaagc 141
Query: 238 caggtgtggtagcgtgtacgtgtaatgccagcattgggaaagcagatagaagtggatccg 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 140 caggtgtggtagcgtgtacgtgtaatgccagcattgggaaagcagacagaagtggatccg 81
Query: 298 tatggctcagtggccagacagcctagttcagtcaggaagaaattctgccccccactccca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 80 tatggctcagtggccagacagcctagttcagtcaggaagaaattctgccccccaccccca 21
Query: 358 accccaaacaagattagtga 377
||||||||||||||||||||
Sbjct: 20 accccaaacaagattagtga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
