BAC Information

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BAC

Clone NameMSMg01-451K12
Chromosome1 (Build37)
Map Location 176,549,937 - 176,709,949
singlet/doubletdoublet
Overlap geneFmn2
Upstream geneAI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7, Fh1, Kmo, Opn3, Chml, Wdr64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451K12.T7 (MSMg01no451_k12.b1)MSMg01-451K12.TJ (MSMg01no451_k12.g1)
ACCAG539094AG539095
length724748
length of high quality
(start - end)		492 (71 - 562)666 (80 - 745)
definitionCHROMAT_FILE: MSMg01no451_k12.b1 PHD_FILE: MSMg01no451_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:59 2005CHROMAT_FILE: MSMg01no451_k12.g1 PHD_FILE: MSMg01no451_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,549,937 - 176,550,426)(176,709,481 - 176,709,949)
sequence
AGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGCCTGACATTTCATGTATATCATCCTTTCTGAAATCTGTTA
CTGTGTGGTTGTTTATTTTTGGAGAACTCATGCTGTCCTGACATCATATT
TCTTGTGTTGTCTTTGTTGAAACTTGCTCATCTTGGACAAGGCCATTGGT
TGGTGTTTTTCAGAACCCTATATTATTTAATTTAAATATTTATAGTCTAC
AAGTAGAACTAGATTTTGGTAAAGTTGAAGTGAGGTTTCTCCCCAGTGGA
TTATGGATGTCACTCAGTAGCTTGATACTCAGCCCAAGAGCTTAGACATG
CTGTCCAGAAACGAGACTTGTTGTGTTTTATTAAAAAAGCCAAAGATATG
CTTTGTACAGCATGGTATGGTAAGGTAGAAGGGGTGCCTCTGTGGCCTCA
TCCTGAGGCATTCCTTCCCCCTGAGGTACCAGCCACGAGACAGGTATAGT
GTAGAATAGAGTTTAGAGTCTATTTGGGTATGGGAAGGGGAGTTGATGAT
GGAGGAGAGANANNNNNNNNNNNNNNTNNNNNNNNNTNNTTTTNNTNTNT
TTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTGNTTT
TTTTTTTATTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTGTTTTTTGGGTTTGTTTTTTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGAAATCAGTAGGAGAG
ATCAGATGATATTCAAAGACCCTTGAAAAACCTCAGATTTGTGACTGCTT
GGTGGAAGGGTTTAGTTGAGTTCAGGGAGAAATATACAACATATGCTGGA
GTCCTCTGTCACAGAAAAGCCAAGGATGGTCCCATTGGTGAGTTCACTTT
CTCCTTTGGGGTGACCACTCCTGCTGTTTTCTGTGGTGAGACTCTCCAGT
GAGAACTTTTTTTTTTGGTTTTTTGGTTTTTTGGTTTTTCGAGACAGGGT
TTCTCTGTATAGCCCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGCTG
GCCTCAAACTCAGAAATCTGCCTGCGTCTGCCTCCCAAGTGCTGGGATTA
AAGGCACGCGCCACCACTGCCTGGCTCCAGTGAGATCATTTACATGAGTG
AAAATAGTACCTACCAAGATCTAGCTCACACCAACCAGGTTTAAATACAT
GAGCTCACCATGACCTGTGAGTAGATTCTGGAGATTCATCATCTTGCTTT
GGATACTGGTGAACTACGGAATCTTGCCTTTCTTTGTAGACCATGATACT
GAGTAACACCATAGCCAAGGGTAAGTTTTTCTTTAAAAGTGTTTCACTTA
ATGACGGAGAGAAAAGAGACCAAAGTCCCATGCTTTATAAATTATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_k12.b1 MSMg01no451_k12.b1 CHROMAT_FILE:
MSMg01no451_k12.b1 PHD_FILE: MSMg01no451_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:59 2005
         (492 letters)



>mm_chr1_176549737_176550628
          Length = 892

 Score =  948 bits (490), Expect = 0.0
 Identities = 490/490 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtatatcatcctttctgaaatctgttactgtgtggttgtttatttttggagaactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtatatcatcctttctgaaatctgttactgtgtggttgtttatttttggagaactca 260

                                                                       
Query: 61  tgctgtcctgacatcatatttcttgtgttgtctttgttgaaacttgctcatcttggacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgtcctgacatcatatttcttgtgttgtctttgttgaaacttgctcatcttggacaa 320

                                                                       
Query: 121 ggccattggttggtgtttttcagaaccctatattatttaatttaaatatttatagtctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccattggttggtgtttttcagaaccctatattatttaatttaaatatttatagtctac 380

                                                                       
Query: 181 aagtagaactagattttggtaaagttgaagtgaggtttctccccagtggattatggatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtagaactagattttggtaaagttgaagtgaggtttctccccagtggattatggatgt 440

                                                                       
Query: 241 cactcagtagcttgatactcagcccaagagcttagacatgctgtccagaaacgagacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactcagtagcttgatactcagcccaagagcttagacatgctgtccagaaacgagacttg 500

                                                                       
Query: 301 ttgtgttttattaaaaaagccaaagatatgctttgtacagcatggtatggtaaggtagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgttttattaaaaaagccaaagatatgctttgtacagcatggtatggtaaggtagaa 560

                                                                       
Query: 361 ggggtgcctctgtggcctcatcctgaggcattccttccccctgaggtaccagccacgaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggtgcctctgtggcctcatcctgaggcattccttccccctgaggtaccagccacgaga 620

                                                                       
Query: 421 caggtatagtgtagaatagagtttagagtctatttgggtatgggaaggggagttgatgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggtatagtgtagaatagagtttagagtctatttgggtatgggaaggggagttgatgat 680

                     
Query: 481 ggaggagaga 490
           ||||||||||
Sbjct: 681 ggaggagaga 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_k12.g1 MSMg01no451_k12.g1 CHROMAT_FILE:
MSMg01no451_k12.g1 PHD_FILE: MSMg01no451_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:59 2005
         (666 letters)



>mm_chr1_176708884_176709949
          Length = 1066

 Score =  907 bits (469), Expect = 0.0
 Identities = 469/469 (100%)
 Strand = Plus / Minus

                                                                        
Query: 198  ttttctgtggtgagactctccagtgagaacttttttttttggttttttggttttttggtt 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 ttttctgtggtgagactctccagtgagaacttttttttttggttttttggttttttggtt 1007

                                                                        
Query: 258  tttcgagacagggtttctctgtatagccctggctgtcctggaattcactctgtagaccag 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tttcgagacagggtttctctgtatagccctggctgtcctggaattcactctgtagaccag 947

                                                                        
Query: 318  gctggcctcaaactcagaaatctgcctgcgtctgcctcccaagtgctgggattaaaggca 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  gctggcctcaaactcagaaatctgcctgcgtctgcctcccaagtgctgggattaaaggca 887

                                                                        
Query: 378  cgcgccaccactgcctggctccagtgagatcatttacatgagtgaaaatagtacctacca 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  cgcgccaccactgcctggctccagtgagatcatttacatgagtgaaaatagtacctacca 827

                                                                        
Query: 438  agatctagctcacaccaaccaggtttaaatacatgagctcaccatgacctgtgagtagat 497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  agatctagctcacaccaaccaggtttaaatacatgagctcaccatgacctgtgagtagat 767

                                                                        
Query: 498  tctggagattcatcatcttgctttggatactggtgaactacggaatcttgcctttctttg 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  tctggagattcatcatcttgctttggatactggtgaactacggaatcttgcctttctttg 707

                                                                        
Query: 558  tagaccatgatactgagtaacaccatagccaagggtaagtttttctttaaaagtgtttca 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  tagaccatgatactgagtaacaccatagccaagggtaagtttttctttaaaagtgtttca 647

                                                             
Query: 618  cttaatgacggagagaaaagagaccaaagtcccatgctttataaattat 666
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  cttaatgacggagagaaaagagaccaaagtcccatgctttataaattat 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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