Query= MSMg01no451_l20.b1 MSMg01no451_l20.b1 CHROMAT_FILE:
MSMg01no451_l20.b1 PHD_FILE: MSMg01no451_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:06 2005
(694 letters)
>mm_chr1_140470140_140471234
Length = 1095
Score = 1226 bits (634), Expect = 0.0
Identities = 677/692 (97%), Gaps = 4/692 (0%)
Strand = Plus / Plus
Query: 5 gaattctaaacattcaatccgttcagatctagaatgaggggttcctgggaactactggcc 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaacattcaatcagttcagatctagaatgaggggttcctgggaactactggcc 264
Query: 65 taagacacctggcagaaagatgaaaactgtcactggagaaggtacatccaagtctccagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagacacctggcagaaagatgaaaactgtcactggagaaggtacatccaagtctccagt 324
Query: 125 gtatttctataaatgatttcccacatagagcatccaacacatgataaaaacataaccaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtatttctataaatgatttcccacatagagcatccaacacatgataaaaacataaccaga 384
Query: 185 tatttaaacaattaagaatccataaacaaaaccaacagatagaatatgcaaaataaaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatttaaacaattaagaatccataaacaaaaccaacagatagaatatgcaaaataaaaaa 444
Query: 245 aa-tatcctcagaaggacagccaagccggaaaactaagcagtgttgctgtggtaaacaat 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatatcctcagaaggacagccaagccggaaaactaagcagtgttgctgtggtaaacaat 504
Query: 304 gactaaaagcaacctgggaagagaaagggtctatatcagtttacagcttacggtacacta 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 gactaaaagcaacctgggaagagaaagggtctatatcagtttacagcttacagtacacta 564
Query: 364 agggaagtcatggaaagaacagaagcggacactaagaagggactctaaatactggtctgc 423
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 agggaagtcatggaaagaacagaagcggacaccaagaagggactctaaatactggtctgc 624
Query: 424 tctctccgcttgttcagctactttccaaatagatctcagctccacctgtccaggggtccc 483
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||
Sbjct: 625 tctctctgcttgttcagctactttccaaatagacctcagccccacctgtccaggga--cc 682
Query: 484 ccacggtgggctggacgctgccacaacaatcagcaaaggaaaaggccc-acagacacgcc 542
||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 683 ccacggtgggctgcaccctgccacaacaatcagcaaaggaaaaggccccacagacacgcc 742
Query: 543 cacaagccaatctgatggaggcaatttttcaacggatggtcccatgtgactcgggtttgt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cacaagccaatctgatggaggcaatttttcaacggatggtcccatgtgactcgggtttgt 802
Query: 603 gtcaagttggcaaaaacaagccagcagaaatcataattaaacattatccacaggaaataa 662
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtcaagttgacaaaaacaagccagcagaaatcataattaaacattatccacaggaaataa 862
Query: 663 tagggtaataatgattatagaatgaaaattgt 694
|| |||||||||||||||||||||||||||||
Sbjct: 863 taaggtaataatgattatagaatgaaaattgt 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space: 742140
Effective search space used: 742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_l20.g1 MSMg01no451_l20.g1 CHROMAT_FILE:
MSMg01no451_l20.g1 PHD_FILE: MSMg01no451_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:06 2005
(638 letters)
>mm_chr1_140599397_140600433
Length = 1037
Score = 1180 bits (610), Expect = 0.0
Identities = 631/638 (98%), Gaps = 1/638 (0%)
Strand = Plus / Minus
Query: 1 cttcagaagttgtatcattctgttttcttggcatgctgcttcctcaaacaggagagctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cttcagaagttgtatcattctgttttcttggcatgctgcttcctcaaacaggagagctgg 778
Query: 61 ctcgagaagacagaatttttccaggcccatagaagccttccttgttatagaaagaagcgc 120
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctctagaagacagaa-ttttccaggcccatagaagccttccttgttatagaaagaagcgc 719
Query: 121 tttactgaggcggaatgtgttagtgttctttaccactggatggagctgctttatcttcta 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tttactgaggcggaatgcgttagtgttctttaccactggatggagctgctttatcttcta 659
Query: 181 attaatgtcctcggtgaccaatggtttgttatccttggctcttctctgcttctcctttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 attaatgtcctcggtgaccaatggtttgttatccttggctcttctctgcttctcctttag 599
Query: 241 gttccaaaatatcttaaagaatcctgcaagaaaaaaaagcaagtttcatttttcacattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gttccaaaatatcttaaagaatcctgcaagaaaaaaaagcaagtttcatttttcacattg 539
Query: 301 agaactaaaatcttcagcttcttattcttctgaacgctgaggctggatgggtggaagcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agaactaaaatcttcagcttcttattcttctgaacgctgaggctggatgggtggaagcaa 479
Query: 361 agccatctaagctacaccaaaagcaacaggggcttggatctcaccacagcccaaagccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agccatctaagctacaccaaaagcaacaggggcttggatctcaccacagcccaaagccac 419
Query: 421 agtgaattcacttatcatcggtccatcaacttctttttgcggaagctgcctctgcgctag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agtgaattcacttatcatcggtccatcaacttctttttgcggaagctgcctctgcgctag 359
Query: 481 tgctcttcagggcccctctggaaagaataatactatgggtttaggagaaaacttttcttg 540
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 358 tgctcttcaggacccctctggaaagaataatgctatgggtttaggagaaaacttttcttg 299
Query: 541 actattttccgctacagacatgaacttttctggccccctacctctttcccatgcctcttc 600
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acttttttccactacagacatgaacttttctggccccctacctctttcccatgcctcttc 239
Query: 601 tgtcttcactccttgaaaaatatttttagactttgatg 638
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tgtcttcactccttgaaaaatatttttagactttgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
