Query= MSMg01no452_b17.b1 MSMg01no452_b17.b1 CHROMAT_FILE:
MSMg01no452_b17.b1 PHD_FILE: MSMg01no452_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:34 2005
(713 letters)
>mm_chr1_165902770_165903882
Length = 1113
Score = 949 bits (491), Expect = 0.0
Identities = 494/495 (99%)
Strand = Plus / Minus
Query: 7 gaattcagatatttgctgggtgcatctttttaaatattatgtgttaggcagtttgcttat 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaattcagatatttgttgggtgcatctttttaaatattatgtgttaggcagtttgcttat 436
Query: 67 aattgccatgtttttaccataattagtatcaagtaattgcaaaaatgttgagtatacatt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aattgccatgtttttaccataattagtatcaagtaattgcaaaaatgttgagtatacatt 376
Query: 127 tcatgtcacataggttttagttgaagtttaaactccattactgagatatttctatgaaag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcatgtcacataggttttagttgaagtttaaactccattactgagatatttctatgaaag 316
Query: 187 tctttttaaactcctttacttttatattgtttctttcttaaaagcattagcttctaagaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctttttaaactcctttacttttatattgtttctttcttaaaagcattagcttctaagaa 256
Query: 247 acagaattaatttatagtaaattcagcatttactaatcttaatacacccattttacctta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acagaattaatttatagtaaattcagcatttactaatcttaatacacccattttacctta 196
Query: 307 tatttattttaatttaaattaatttatttacttttgtttgttggatatagagtctgtact 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatttattttaatttaaattaatttatttacttttgtttgttggatatagagtctgtact 136
Query: 367 ctggccgcagagtcttcctgccttggcctcctgaatgttgaaattacaagtgtgagctat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctggccgcagagtcttcctgccttggcctcctgaatgttgaaattacaagtgtgagctat 76
Query: 427 taaaagcaattttccatagacgtaactaagccagaatttatcagtcctatcttttcacat 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 taaaagcaattttccatagacgtaactaagccagaatttatcagtcctatcttttcacat 16
Query: 487 agattttactacttg 501
|||||||||||||||
Sbjct: 15 agattttactacttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no452_b17.g1 MSMg01no452_b17.g1 CHROMAT_FILE:
MSMg01no452_b17.g1 PHD_FILE: MSMg01no452_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:34 2005
(628 letters)
>mm_chr1_165788712_165789739
Length = 1028
Score = 1093 bits (565), Expect = 0.0
Identities = 614/633 (96%), Gaps = 9/633 (1%)
Strand = Plus / Plus
Query: 1 tctgatcatgaactggctcaaaatagggaatttggactcttttttttttaatttt----t 56
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 199 tctgatcatgaactggctcaaaatagggaatttggactctttttttttt--ttttatttt 256
Query: 57 tttttcagaaaaatacagtttaaattataatgagaagttgcggtatacttggcatcctgc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttttcagaaaaatacagtttaaattataatgagaagttgcggtatacttggcatcctgc 316
Query: 117 tgaattagtagggtggtttctgattatttatccccactgtaatggaagattatgagagtc 176
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 tgaattagtagggtggtttctgatcatttatccccactgtaatggaagattatgagagtc 376
Query: 177 aggacttctgaggtcatttaagacccagtaacccagtagaaggccaggcaggcctgtgcc 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggacttctgaggtaatttaagacccagtaacccagtagaaggccaggcaggcctgtgcc 436
Query: 237 -aggtggccttactcaagcagaagagaattcttctggtctgtatcagtgagcctttcact 295
||||| ||||||||||||||||| | | ||||||||| ||||||||||||||||| |||
Sbjct: 437 caggtg-ccttactcaagcagaagcgtactcttctggtgtgtatcagtgagcctttaact 495
Query: 296 tacgtgatacaggagagaatcagctgagcatgctattttcaaaagctccacgagtgattg 355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 496 tacgtgatacaggagagaatcagctgagcatgctattttcaaaagctccac-agtgattg 554
Query: 356 taacgcacagccagaaaatgcaccactgctctaagtaaatgtaagccccagcattgtaag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 taacgcacagccagaaaatgcaccactgctctaagtaaatgtaagccccagcattgtaag 614
Query: 416 taccaggaaacgagaacagaaaaattagtccttcagagatcattagtgtctatactgccc 475
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 615 taccaggaaacgagaacagaaaaattaatccttcagagatcattagtgtctatactgcct 674
Query: 476 tctggatgcaccagcccagttcactgccttgaaactgtcttctctcttgacttgtgaaaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tctggatgcaccagcccagttcactgccttgaaactgtcttctctcttgacttgtgaaaa 734
Query: 536 gtccaagaaacagaacctcaatagctcaggcactaagatcaacaattaataaattggacc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtccaagaaacagaacctcaatagctcaggcactaagatcaacaattaataaattggacc 794
Query: 596 ttatgaaactgagaagcttctataaagaaagag 628
|||||||||||| ||||||||||||||||||||
Sbjct: 795 ttatgaaactgaaaagcttctataaagaaagag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
