BAC Information

Click to search

BAC

Clone NameMSMg01-452C11
Chromosome1 (Build37)
Map Location 173,912,074 - 173,912,563
singlet/doubletsinglet
Overlap genenone
Upstream geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452C11.T7 (MSMg01no452_c11.b1)MSMg01-452C11.TJ (MSMg01no452_c11.g1)
ACCAG539473AG539474
length748750
length of high quality
(start - end)		474 (76 - 549)503 (77 - 579)
definitionCHROMAT_FILE: MSMg01no452_c11.b1 PHD_FILE: MSMg01no452_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:38 2005CHROMAT_FILE: MSMg01no452_c11.g1 PHD_FILE: MSMg01no452_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAGATTCTCCGGAGTCCATATAGTCCAACACATAAACAAA
ACTGAGTCACACACACACACACACACACACACACACACACACACACACAC
CAGTTGAAAAAGAAAGCCCTAGCTTTTCATGCCTCTATGACCAATACTCA
ACTTCAGCAAGCACTACTCACTTTGGCTTGCTGTCACAACCCTCTGCTTG
GTGACTCCCATTATCCCTTATACTCCTTACACTACCACAAAGCACAAAGT
CATTTGTTTGACTTGGTGTCTGTTTAGCAGACCGTATGAAGGGGGAACTT
GAGGCCTCGTGGTCATGATGATTTACCTCCAGCTACCTAAAGGGATTTGA
GAATCACTCAGCGCGAAGTGTGTTGAAGTGTCTTCACCAAGCCAGAACTG
TAAAATGACCACGTGGAAACAATGAATGGGGAAGGAGAAAAAACAGACAC
TCTGACTTAATCATTCCTTTACTCTCACTTTTGCAGGGGGGACCCCTGAT
GAGTCAGACTGTAAAAATCAATAAGAAACTGGGAAATAACAGAAGTTGCA
GTGGAATCAAGAAAGGGACTGCATTTCTGCTTTGTTTTGGTTAAAAAATT
ACATTAAAAGAATGGGATCTTCTCTATGCTTTCTTGCCACTACACATAAT
CCCTGAATTCCATGAAATGCTGACAAAAAAAAGGGTTTAGGAAAGAAC

NCTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTTG
AACTCAGAAATCCGCCTGTCTCTGCCTCCCGAGTGCTGGGAATAAAGGCG
TGCGCCACCACAGCCGGCTCTTAGGCCCTAGTTCTTAAAAGAAAACAAAC
AAAATAGAAAGATGGGTACAAAGCAAACACCTGTTATGTATTACCTATGA
TTGGTGCCTCACACCAGTACACCAGTACTTAGGAGGCTAGGTGAGACAAG
TTTGCAAGACCAGCCTGGTGTGCATTATAAATTTCAGGTCAGCCTGGGAT
AAAGTGAGTTCCTGTCTCAAAAGTCAAATAAACAAGCTGAAGAAATGGTT
CACTGGGGCTGGAGGTGACTCAGCGGTGAAGAGCACTGGCTGCTTGCTCT
TCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACGACC
ATCTGTAATGGGATCCAGTGCCCTCTTCTGGTGTGTGAAGACAGCTACAG
TGTACCCATATAAATGAAATAAATCTTTGAAGAAAGAATGATAGAAAGAC
AGAAAGAAAGAAAGAAAGAAAGATAGAAAGAGAGAAAGAAAGAAAGAAAG
AAAGAAATGGTTCACTGTTTTAGAGTACTGGCTGTTCTTGCAGAGGACCC
ATATTCAGTTCACAGCACCCACATGGTAGCTCACAGCTACCTATACCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_c11.b1 MSMg01no452_c11.b1 CHROMAT_FILE:
MSMg01no452_c11.b1 PHD_FILE: MSMg01no452_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:38 2005
         (474 letters)



>mm_chr1_173911890_173912763
          Length = 874

 Score =  874 bits (452), Expect = 0.0
 Identities = 473/490 (96%), Gaps = 16/490 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatatagtccaacacataaacaaaactgagtcacacacacacacacacacacacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccatatagtccaacacataaacaaaactgagtcacacacacacacacacacacacacaca 244

                                                                       
Query: 61  cacacacacacacac----------------cagttgaaaaagaaagccctagcttttca 104
           |||||||||||||||                |||||||||||||||||||||||||||||
Sbjct: 245 cacacacacacacacacacacacacacacaccagttgaaaaagaaagccctagcttttca 304

                                                                       
Query: 105 tgcctctatgaccaatactcaacttcagcaagcactactcactttggcttgctgtcacaa 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgcctctatgaccaatactcaacttcagcaagcactactcactttggcttgctgtcacaa 364

                                                                       
Query: 165 ccctctgcttggtgactcccattatcccttatactccttacactaccacaaagcacaaag 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccctctgcttggtgactcccattatcccttatactccttacactaccacaaagcacaaag 424

                                                                       
Query: 225 tcatttgtttgacttggtgtctgtttagcagaccgtatgaagggggaacttgaggcctcg 284
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcatttgtttgacttggtgtcagtttagcagaccgtatgaagggggaacttgaggcctcg 484

                                                                       
Query: 285 tggtcatgatgatttacctccagctacctaaagggatttgagaatcactcagcgcgaagt 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggtcatgatgatttacctccagctacctaaagggatttgagaatcactcagcgcgaagt 544

                                                                       
Query: 345 gtgttgaagtgtcttcaccaagccagaactgtaaaatgaccacgtggaaacaatgaatgg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtgttgaagtgtcttcaccaagccagaactgtaaaatgaccacgtggaaacaatgaatgg 604

                                                                       
Query: 405 ggaaggagaaaaaacagacactctgacttaatcattcctttactctcacttttgcagggg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggaaggagaaaaaacagacactctgacttaatcattcctttactctcacttttgcagggg 664

                     
Query: 465 ggacccctga 474
           ||||||||||
Sbjct: 665 ggacccctga 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |