Query= MSMg01no452_d24.b1 MSMg01no452_d24.b1 CHROMAT_FILE:
MSMg01no452_d24.b1 PHD_FILE: MSMg01no452_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:45 2005
(227 letters)
>mm_chr1_58314067_58314693
Length = 627
Score = 340 bits (176), Expect = 3e-98
Identities = 191/198 (96%), Gaps = 5/198 (2%)
Strand = Plus / Minus
Query: 1 attctctcatcttttc---acaaaacaaaataccaaagaacaaaaaaaccatgggcccaa 57
||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 attctctcatc--tacaaaacaaaacaaaataccaaagaacaaaaaaaccatgggtccaa 327
Query: 58 tccttttggagtaggaggaatgatagtgtgtttcctcagttctggctggctttctctcgt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccttttggagtaggaggaatgatagtgtgtttcctcagttctggctggctttctctcgt 267
Query: 118 ctccttgtggtttttgcattcctgacatccggatgactcttgcaattgccgtgtgtgtgt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctccttgtggtttttgcattcctgacatccggatgactcttgcaattgccgtgtgtgtgt 207
Query: 178 gtgtgtgtgtgtgtgtgt 195
||||||||||||||||||
Sbjct: 206 gtgtgtgtgtgtgtgtgt 189
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space: 134724
Effective search space used: 134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no452_d24.g1 MSMg01no452_d24.g1 CHROMAT_FILE:
MSMg01no452_d24.g1 PHD_FILE: MSMg01no452_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:45 2005
(536 letters)
>mm_chr1_58142233_58143169
Length = 937
Score = 986 bits (510), Expect = 0.0
Identities = 531/538 (98%), Gaps = 3/538 (0%)
Strand = Plus / Plus
Query: 1 ctggaagaagagaggaatggctgtggttcccctgaagtttcctgtgggtattggatcagt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaagaagagaggaatggctgtgattcccctgaagtttcctgtgggtattggatcagt 260
Query: 61 agccatgggacaggtcagtgcttcaaacacatgcgggaatgtcacctggcagaagcctgg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 agccatgggacaggtcagtgcttcaaacacatgtgggaatgtcacctggcagaagcctgg 320
Query: 121 ttgaattagctacatgatggccctgcccaggttgtgcatggcaaagcctgtactactcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaattagctacatgatggccctgcccaggttgtgcatggcaaagcctgtactactcta 380
Query: 181 ggacaaaagaagaactcctctgcacagcccaggggcattttaacagttagatagaaacat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacacaagaagaactcctctgcacagcccaggggcattttaacagttagatagaaacat 440
Query: 241 tcttggtgggaaatgggga-gggggaggacctgtgatttattcctggccctggtgttaag 299
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttggtgggaaatggggagggggggggacctgtgatttattcctggccctggtgttaag 500
Query: 300 aagccgagataactgctctgagtcccagatgttaatgtaagagacaggggcagaaggcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagccgagataactgctctgagtcccagatgttaatgtaagagacaggggcagaaggcct 560
Query: 360 ctgagactcctcttccagctgtgtgactcagtgtttctagacatgaaatagaaacgggaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagactcctcttccagctgtgtgactcagtgtttctagacatgaaatagaaacgggaa 620
Query: 420 gttgtggggtacttggt-gcctgatttccttgctaggtagagtaaattaaacctggaaaa 478
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgtggggtact-ggttgcctgatttccttgctaggtagagtaaattaaacctggaaaa 679
Query: 479 gtaaattatttaactttttgaacaaagtctttggagtttttctcttcataactgctaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtaaattatttaactttttgaacaaagtctttggagtttttctcttcataactgctaa 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
