Query= MSMg01no452_g15.b1 MSMg01no452_g15.b1 CHROMAT_FILE:
MSMg01no452_g15.b1 PHD_FILE: MSMg01no452_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:58 2005
(683 letters)
>mm_chr1_49355304_49356387
Length = 1084
Score = 957 bits (495), Expect = 0.0
Identities = 583/631 (92%), Gaps = 38/631 (6%)
Strand = Plus / Minus
Query: 89 gaactgactgactagaactcagagatctgcttgtctctgtcttctgtgagtaaaggcata 148
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 1084 gaactgactgactagaactcagagatctgcttgtctccgtctgctgtgagtaaaggcata 1025
Query: 149 aaacaacacaactggccctaaggtttttgttgttgttgt--tt-ttgtt-ttgtt----t 200
||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct: 1024 aaacaccacaactggccctaaggtttttgttgttgttgttgttgttgttgttgtttttgt 965
Query: 201 tttg---tttgtttgtttgtttgtttttctgaaacttgctctataccaggcttacattga 257
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 tttgttttttgtttgtttgtttgtttttctgaaacttgctctataccaggcttacattga 905
Query: 258 tactcagatatatactggattccatctagcagagttaaaggtttttctgaattctaccca 317
||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 904 tactcagatatatactggattccatttagcagagtt-aatttttttctgaattctaccca 846
Query: 318 aatcacacagaccaagaatgtccttggatgtgatcccttgtcc-gaaccgccatgtattt 376
||||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||
Sbjct: 845 aatcacacagaccaagaatgttcttggatgtgatcccttg-cctgaacagccatgtattt 787
Query: 377 ctattaaaattcctctacaaggaaagaaaggaacata-ttttttgttctagctttgattt 435
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 786 ctattaaaattcctctacaaggaaagaaaggaacatatttttttgttctagctttgattt 727
Query: 436 gtttgctttacatgtttgttacaaatagcaaaatgtattatcttcccattttcattatct 495
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gtttactttacatgtttgttacaaatagcaaaatgtattatcttcccattttcattatct 667
Query: 496 tctttctgtaggtctctgttccgattaatgcacatgtttcatgtttttcctagtcctgtg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tctttctgtaggtctctgttccgattaatgcacatgtttcatgtttttcctagtcctgtg 607
Query: 556 aagaaactgt-----------------------aaatgcatatgtatgttttggtgtgta 592
|||||||||| |||||||||||||||||||||||||||
Sbjct: 606 aagaaactgtagatagtatctcaagaaaatctgaaatgcatatgtatgttttggtgtgta 547
Query: 593 gaataaaacatcatacattttcctaggcctaatggaaaagatttatagcactagctactc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaataaaacatcatacattttcctaggcctaatggaaaagatttatagcactagctactc 487
Query: 653 aaaaggcaaaggtattaacacatgttcagca 683
|||||||||||||||||| ||||||||||||
Sbjct: 486 aaaaggcaaaggtattaaaacatgttcagca 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space: 722802
Effective search space used: 722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_g15.g1 MSMg01no452_g15.g1 CHROMAT_FILE:
MSMg01no452_g15.g1 PHD_FILE: MSMg01no452_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:58 2005
(601 letters)
>mm_chr1_49182975_49183975
Length = 1001
Score = 1139 bits (589), Expect = 0.0
Identities = 598/601 (99%)
Strand = Plus / Plus
Query: 1 actctccaaagaaacaaacagaaaaacaagaaaaatccaaaagtcctgtatccagggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctccaaagaaacaaacagaaaaacaagaaaaatccaaaagtcctgtatccagggaaa 260
Query: 61 gactggcagagaggaaaaagggtagacagggattggaaagataaagagatggtacaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactggcagagaggaaaaagggtagacagggattggaaagataaagagatggtacaaaga 320
Query: 121 ataatcagaatgcattgtttataagtatgagatttcaaagtataaacaaataagagtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatcagaatgcattgtttataagtatgagatttcaaagtataaacaaataagagtaaa 380
Query: 181 ataattaaatggaaatagtcagctgtggagttgggggtggggaaattctagagtgttcca 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ataattaaatggaaatagtcagctgtggggttgggggtggggaaattctagagtgttcca 440
Query: 241 gagacccagggtttgagaagttcccaaaattcagtgtggatgaccttatctgaaataccc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gagacccagggtttgagaagttcccaaaattgagtgtggatgaccttatctgaaataccc 500
Query: 301 aaccatagggagatggaacctgaagagacaatctccagtaaatagacagggcctcctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccatagggagatggaacctgaagagacaatctccagtaaatagacagggcctcctttg 560
Query: 361 gaggacagggttaacaacctaccttcaaagtttttgatccagaattgttcctgactaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggacagggttaacaacctaccttcaaagtttttgatccagaattgttcctgactaaaa 620
Query: 421 gaaacacattaacaaaactggaacagagattgaagaaaaggccgtccagtgaccaggcga 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gaaacacattaacaaaactggaacagagattgaagaaaaggccgtccagtgaccaggcca 680
Query: 481 acttgggatctatcccttggataggtcccaaacctggacaaaattaatgatactttgttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttgggatctatcccttggataggtcccaaacctggacaaaattaatgatactttgttg 740
Query: 541 tgcttgcagacaggagcctaccatggttgtctctcagaaatcctcccaacccctaactga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcttgcagacaggagcctaccatggttgtctctcagaaatcctcccaacccctaactga 800
Query: 601 g 601
|
Sbjct: 801 g 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
