BAC Information

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BAC

Clone NameMSMg01-452I17
Chromosome1 (Build37)
Map Location 63,384,905 - 63,521,379
singlet/doubletdoublet
Overlap geneLOC667644, LOC100042638, Adam23
Upstream genePard3b, LOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik
Downstream geneGm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452I17.T7 (MSMg01no452_i17.b1)MSMg01-452I17.TJ (MSMg01no452_i17.g1)
ACCAG539771AG539772
length773753
length of high quality
(start - end)
395 (77 - 471)553 (74 - 626)
definitionCHROMAT_FILE: MSMg01no452_i17.b1 PHD_FILE: MSMg01no452_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:08 2005CHROMAT_FILE: MSMg01no452_i17.g1 PHD_FILE: MSMg01no452_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,520,985 - 63,521,379)(63,384,905 - 63,385,457)
sequence
AAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCACTCAATTCGCTGCATCCATTTTAAATGATGTCATTTTCTT
GCTCCCTGCGCATCTTCCCACTCTTCTTCACGATGCCCCGGTGCACAGAG
CACGGATTCTGCACTCGGCCACGGCTGGTAGAGGCTTCTTCCCCCATCAT
CCCTTCCCCCTATGCTGCCCTTGACACCACATATAAACAGACTTTAATTT
CTGAAATCAGCTATGGCATTCATTTTATGAGATTTTTGTTAACAAAATTA
TGTAGTTTTAAGGTTTTTTTAAACTTGAAATATTCAATATAATGAAGCCA
AGTGAGTCCTTCATACTCTGTGTTCATGTCTATTTATGCATGACTTTTTT
ATCTTTGAGGCAGGTTTGATTGTTTGTTTGTTTGTTCTTCTGAGACAAGG
TTTTTCTGTGCAGCCCTGGCTGTCCTAGAACTCTGAGATCTACTGGTCTC
TGCCTGCCAAGTGCTGGTTGAAGTCGTGTGGCACCATGCTCAGCTTTGAG
ACAGGTTCTTAAGCATTCAGGCTATACTCAAATTCACCAAGTAACTGAGG
CTGGCCGTGAATCCCTGCCATGGAGGATAAATCATACATTTTTTTATTTA
CCCCCATAAATAAGCGTACATGCCCCCAAATTATTGAATGGGTTCTATTA
CCCTTCACTCCTTCCCAAAATAATTAGGATAATTTCGCCCTAAAAACATT
GAAAATGAATTACGTGGTTTTTG
ACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAGTGATGCTGGTCCTTACTGCTCT
CCTAACGTTCTTCATACTAGAGTGTCACTTGTATGTATAATCTTCTGATT
AATCTGATGGTCTAAACAATGTATCAATCCCAGAATGCCCCATTCCTCAA
ATCTTTTAATTATTTTCTTCACTGCCTCCCAAGACAACTCTTGCATTTCA
AGCTTACCCAGCAAAGGCTATTGTTTCCTCTGAGGTTTTAAAGACACTTT
ACCCTCTCTGTTTGTATCCTTGCCAGAGTGTTAAATCCCGTGTTCTGAGA
GAGTGTCTTTATGTCAGTAAACCTATGCTTGGACAGGACTTGATGGAGCA
TACTTGAAATCTAATCCTCTGTGCCTTCTGTTAGAACATCCTATCTAATC
TCCCCTTATCATTTTCAGCATGCATACACAGTTGTGTTGGGTTGGGCTTT
AGACCCTAGTAATTGATTTGGCAGATGAGAAAGGGGGGTGGGTAAGCTTC
TGGGAGCAGAGACAGTTGCCTTGCAAGGGAGCTGTCTTTGTAGCATTTAT
TGCTCTGGGGAAGTGCAAAATCAAACTGCTAATTTGGAGGAGAAGGTGGC
TCAAGGCTGTTCTAGGCCTCTAAGAGCCTTAGCTGTTGTGGATTCACCCC
TGCCTTGTGTTTCAAAGTCCTGTACTTTTTTATACAGAGTATGGGTCTTT
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_i17.b1 MSMg01no452_i17.b1 CHROMAT_FILE:
MSMg01no452_i17.b1 PHD_FILE: MSMg01no452_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:08 2005
         (395 letters)



>mm_chr1_63520826_63521620
          Length = 795

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttaaatgatgtcattttcttgctccctgcgcatcttcccactcttcttcacgatgc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cattttaaatgatgccattttcttgctccctgcgcatcttcccactcttcttcacgatgc 495

                                                                       
Query: 61  cccggtgcacagagcacggattctgcactcggccacggctggtagaggcttcttccccca 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 494 cccggtgcacagagcacggattctgcactcggccacggctggtggaggcttcttccccca 435

                                                                       
Query: 121 tcatcccttccccctatgctgcccttgacaccacatataaacagactttaatttctgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcatcccttccccctatgctgcccttgacaccacatataaacagactttaatttctgaaa 375

                                                                       
Query: 181 tcagctatggcattcattttatgagatttttgttaacaaaattatgtagttttaaggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcagctatggcattcattttatgagatttttgttaacaaaattatgtagttttaaggttt 315

                                                                       
Query: 241 ttttaaacttgaaatattcaatataatgaagccaagtgagtccttcatactctgtgttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttttaaacttgaaatattcaatataatgaagccaagtgagtccttcatactctgtgttca 255

                                                                       
Query: 301 tgtctatttatgcatgacttttttatctttgaggcaggtttgattgtttgtttgtttgtt 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgtctatttatgcatgtcttttttatctttgaggcaggtttgattgtttgtttgtttgtt 195

                                              
Query: 361 cttctgagacaaggtttttctgtgcagccctggct 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 194 cttctgagacaaggtttttctgtgcagccctggct 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no452_i17.g1 MSMg01no452_i17.g1 CHROMAT_FILE:
MSMg01no452_i17.g1 PHD_FILE: MSMg01no452_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:08 2005
         (553 letters)



>mm_chr1_63384705_63385657
          Length = 953

 Score = 1054 bits (545), Expect = 0.0
 Identities = 551/553 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagtgatgctggtccttactgctctcctaacgttcttcatactagagtgtcacttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagtgatgctggtccttactgctctcctaacgttcttcatactagagtgtcacttgta 260

                                                                       
Query: 61  tgtataatcttctgattaatctgatggtctaaacaatgtatcaatcccagaatgccccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtataatcttctgattaatctgatggtctaaacaatgtatcaatcccagaatgccccat 320

                                                                       
Query: 121 tcctcaaatcttttaattattttcttcactgcctcccaagacaactcttgcatttcaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcaaatcttttaattattttcttcactgcctcccaagacaactcttgcatttcaagc 380

                                                                       
Query: 181 ttacccagcaaaggctattgtttcctctgaggttttaaagacactttaccctctctgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacccagcaaaggctattgtttcctctgaggttttaaagacactttaccctctctgttt 440

                                                                       
Query: 241 gtatccttgccagagtgttaaatcccgtgttctgagagagtgtctttatgtcagtaaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatccttgccagagtgttaaatcccgtgttctgagagagtgtctttatgtcagtaaacc 500

                                                                       
Query: 301 tatgcttggacaggacttgatggagcatacttgaaatctaatcctctgtgccttctgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgcttggacaggacttgatggagcatacttgaaatctaatcctctgtgccttctgtta 560

                                                                       
Query: 361 gaacatcctatctaatctccccttatcattttcagcatgcatacacagttgtgttgggtt 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacatcctatctaatctccctttatcattttcagcatgcatacacagttgtgttgggtt 620

                                                                       
Query: 421 gggctttagaccctagtaattgatttggcagatgagaaaggggggtgggtaagcttctgg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 gggctttagaccctagtaattgatttggcagatgagaaaggggggtgggtaagcttgtgg 680

                                                                       
Query: 481 gagcagagacagttgccttgcaagggagctgtctttgtagcatttattgctctggggaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcagagacagttgccttgcaagggagctgtctttgtagcatttattgctctggggaag 740

                        
Query: 541 tgcaaaatcaaac 553
           |||||||||||||
Sbjct: 741 tgcaaaatcaaac 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)