Query= MSMg01no452_o14.b1 MSMg01no452_o14.b1 CHROMAT_FILE:
MSMg01no452_o14.b1 PHD_FILE: MSMg01no452_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:37 2005
(701 letters)
>mm_chr1_46668873_46669973
Length = 1101
Score = 1317 bits (681), Expect = 0.0
Identities = 693/697 (99%)
Strand = Plus / Plus
Query: 5 gaattccaaaagttctaaatttgtcatgtatataaatatgcacatgcattctatctgctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaagttctaaatttgtcatgtatataaatatgcacatgcattctatctgctt 264
Query: 65 gcctgaccatccatccatgcattcatttatgcatctgcccatctattcatccatctaccc 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 gcctgaccatccatccatgcattcatttatgcatctgcccacctattcatccatctaccc 324
Query: 125 aactaaatatctatccaaccatccatccatccatcctccatcatcagtctatttatagaa 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 aactaaatatctatccaaccatccatccatccatcctccatcatcagtctatttttagaa 384
Query: 185 gaaaaattaataacaaaaacatgctgttagagaattctgaggttagcagtgtgtgggggg 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaaattaataacaaagacatgctgttagagaattctgaggttagcagtgtgtgggggg 444
Query: 245 agacattatgaaagtggggctgagagtcaggattcaatttaccttttcttttgcctacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacattatgaaagtggggctgagagtcaggattcaatttaccttttcttttgcctacat 504
Query: 305 gttaattattttgtccattccttttactctaggaccttatttggagcccttcacctgcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttaattattttgtccattccttttactctaggaccttatttggagcccttcacctgcac 564
Query: 365 cttggaggagcacctgagggcccagctggcactggaaagacagaaacaaccaaggattta 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 cttggaggagcacctgagggcccagctggcaccggaaagacagaaacaaccaaggattta 624
Query: 425 gcaaaagcggttgccaaacagtgtgtcgttttcaactgctccgatgggctggattatttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaaaagcggttgccaaacagtgtgtcgttttcaactgctccgatgggctggattatttg 684
Query: 485 gccttaggaaaattctttaaggtttggatcaactaactcctcatttctttacagtagggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccttaggaaaattctttaaggtttggatcaactaactcctcatttctttacagtagggt 744
Query: 545 agccatcagtaatggaagggggttacaaagagagacaactggatgcaaacagaagcttta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agccatcagtaatggaagggggttacaaagagagacaactggatgcaaacagaagcttta 804
Query: 605 ctgtgcctggtatagtctcaacaagttccaagcacaagtgagctctgccacgatccagtc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgtgcctggtatagtctcaacaagttccaagcacaagtgagctctgccacgatccagtc 864
Query: 665 cctgctatggaggtcactctatctgactactcctgat 701
|||||||||||||||||||||||||||||||||||||
Sbjct: 865 cctgctatggaggtcactctatctgactactcctgat 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_o14.g1 MSMg01no452_o14.g1 CHROMAT_FILE:
MSMg01no452_o14.g1 PHD_FILE: MSMg01no452_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:37 2005
(620 letters)
>mm_chr1_53496662_53497686
Length = 1025
Score = 938 bits (485), Expect = 0.0
Identities = 578/615 (93%), Gaps = 13/615 (2%)
Strand = Plus / Plus
Query: 19 acacacacacacacacacacacacacaca----cacacacacatgcattcacatgtatac 74
||||||||||||||||||||||||||||| |||| | |||| |||||| ||||||||
Sbjct: 211 acacacacacacacacacacacacacacaggaacacatatacatacattcatatgtatac 270
Query: 75 acatgctcacatgtacacaca----gttgatttctagataatttcttcatgcttcagttc 130
|||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct: 271 acatgcacacatgtacacacactcagttgatttctagataattacttcatgcttcagctc 330
Query: 131 ctttgaataatcacaaacggcaaactcactgcagaaatattaaaaatatcttaatttcct 190
||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 331 ctttgaataattacaaatagcacactcactgcagaaatattaaaaatatcctaatttcct 390
Query: 191 accctaggcctcatca-tgtctttctcattaccattctttgcacaaagggactttcttcc 249
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 391 accctaggcctcatcactgtctttctcattaccattctttgcacaaagggattttcttca 450
Query: 250 ctcatcagattaaaataacagcaaaacacaacacttattcaacagcccctttcctcccca 309
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 451 ctcatcagattaaaacaacagcaaaacacaacacttattcaacagcacctttcctcccca 510
Query: 310 agttagctttaacctcatcacaaaattatagtcctgcaaataaaatgacagatttagaga 369
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agttagctttaacctcatgacaaaattatagtcctgcaaataaaatgacagatttagaga 570
Query: 370 cttgaagtttcctaaaagctagtttgtgataggaatggcccagtttttggaagagggacc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cttgaagtttcctaaaagctagtttgtgataggaatggcccagtttttggaagagggacc 630
Query: 430 tgctggtttacctgtacaggtaaacatggctgtctgttagcactggacggt----ccagt 485
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 631 tgctggtttacctgcacaggtaaacatggctgtctgttagcactggacggtaggtccagt 690
Query: 486 taggaatatgagcatctctcctgaagagaagaggagatagattccacaatttcacttttc 545
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 691 taggaatatgagcatctctcccgaagagaagagaagctagattccacaatttcacttttc 750
Query: 546 agactataacagagcaaaacttgcttgcttcccaacaggagactagaactcccaaggtaa 605
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 751 agactataacagagcaaaacttacttgcttcgcaacaggagactagaactcccaaggtaa 810
Query: 606 aggcagactgtgcca 620
|| ||||||||||||
Sbjct: 811 agtcagactgtgcca 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1025
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1015
Effective search space: 619150
Effective search space used: 619150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
