Query= MSMg01no453_e21.b1 MSMg01no453_e21.b1 CHROMAT_FILE:
MSMg01no453_e21.b1 PHD_FILE: MSMg01no453_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:08 2005
(715 letters)
>mm_chr1_11126308_11127422
Length = 1115
Score = 1280 bits (662), Expect = 0.0
Identities = 698/710 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaagagatatatcaaatttttaaaaagaaaataaaacttctaagtcatgttctg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gaattcaaagagatatatgaaatttttaaaaagaaaataaaacttctaagtcatgttctg 855
Query: 65 gctcttttggagtcaacacaatatagaaaaacaagagaaagtttagaaaaactggtagat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gctcttttggagtcaacacaatatagaaaaacaagagaaagtttagaaaaactggtagac 795
Query: 125 aatgtgctacaaaaatggcaccaatagtgaaatcagttgcagatgttgtgactcatctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aatgtgctacaaaaatggcaccaatagtgaaatcagttgcagatgttgtgactcatctgg 735
Query: 185 gacccatggtgagacccagataggttgtcttgaccttagtggatcactgagacactccca 244
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 734 gacccatggcgagacccagataggttgtcttgacctcagtggatcactgagacactccca 675
Query: 245 atgtcccaagaggaaccaaagcaatgagatccatgtgtgaggtttgagggtaagagttcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atgtcccaagaggaaccaaagcaatgagatccatgtgtgaggtttgagggtaagagttcc 615
Query: 305 taccgtgatgcataaatccattgtcacagagcccaacagcaaatatcattgcctcttccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taccgtgatgcataaatccattgtcacagagcccaacagcaaatatcattgcctcttccc 555
Query: 365 tggtacggcaatcaccctgttaaccaagaaataaatcactgcgcatggtgacaggcaact 424
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 554 tggtacggcaatcaccctgttaaccaaaaaataaatcactgcacatggtgacaggcaact 495
Query: 425 ggaggctgtatagcacctgaattataggttaaggaacatctcccacacatgacatcatta 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 494 ggaggctgtatagcacctgaattatagtttaaggaacatctcccacacatgacatcacta 435
Query: 485 ctccctagtccttttcttaacatgtttcttaacacataagtactctaccaaatctactgt 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 434 ctccctagtccttttcttaacatgtttcttaacacatgagtactctaccaaatctactgt 375
Query: 545 catttttatttcaattcgaccatcaatagtctcatttgctttctcctttttcattatcta 604
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 374 catttttatttcaattcgaccatcaatagtctcatttgctttctcctgtttcattatcta 315
Query: 605 aaatagcaatttttttctggagtcattcaaacatcagctattgcagaactcagctgtagc 664
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaatagcaaattttttctggagtcattcaaacatcagctattgcagaactcagctgtagc 255
Query: 665 acacaggaatatcatgctataaagttagagagacttcttaataatcaaga 714
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 254 acacaggaatatcatgctctaaagttagagagacttcttaataatcaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_e21.g1 MSMg01no453_e21.g1 CHROMAT_FILE:
MSMg01no453_e21.g1 PHD_FILE: MSMg01no453_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:08 2005
(622 letters)
>mm_chr1_10977281_10978310
Length = 1030
Score = 835 bits (432), Expect = 0.0
Identities = 498/526 (94%), Gaps = 14/526 (2%)
Strand = Plus / Plus
Query: 1 tagtctgacttgggtacacattgctgagtaggagggacaggaggtgtagtcagaggtggt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tagtctgacttgggtacacattgctgagtaggagggataggaggtgtagtcagaggtggt 260
Query: 61 gggttagagttgacac----ctttaatttgaaaataatgaaaaaggctat-----tctat 111
|||||||||||||||| |||||| ||||||||| ||||||||||||| |||||
Sbjct: 261 gggttagagttgacacttacctttaaattgaaaatagtgaaaaaggctatcctattctat 320
Query: 112 tctatgaaatactctttgttttctataattttgtgaccatagaaccagttctttacatat 171
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgaaatactctttattttgtataattttgtgaccatagaaccagttctttacat-- 378
Query: 172 gctcatatcagcttgatacagaaacaactcaaagttgaccttctttttcctggcttcctg 231
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 379 gctcatatcagcttgatacagaaacaactcaaagttgaccttcttcttcctggcttcctg 438
Query: 232 gctcaaatctc-tctgggataaccagtcaatactcatgtgtgagaaagatgacaactgag 290
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 439 gctcaaatctcatctgggataaccagtcaatactcatgtgtgagaaagatggcaacggag 498
Query: 291 ggaccaactaattcttagttgggcaacctttgtccaggagataaaggatgaatggccagg 350
||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaccaactaagtctcagtggggcaacctttgtccaggagataaaggatgaatggccagg 558
Query: 351 gaagaataattagaggaaggccaaactctggagaacatcagcttttagaaacggaacatg 410
|||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct: 559 gaagaataattagaggaagggcaaactctagagaacatcagcttttagaaatggaacatg 618
Query: 411 gagaacttggcatggatgaactggagaatcaaagagaagcagggacttttaatgttctgt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gagaacttggcatggatgaactggagaatcaaagagaagcagggacttttaatgttctgt 678
Query: 471 tactgtgaagagacaccatgatcaaagctactcttataaaggagaa 516
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 679 tactgtgaagagac--catgatcaaagctactcttataaaggagaa 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1030
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1020
Effective search space: 624240
Effective search space used: 624240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
