NAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTTTGGTGTTGTTTTTGAAAGTCCTTGAGTTATGTATTAGG
TTCTCCGTTTAAGATCTCTCTGATTTTTTTTAATATGCTTGAAGCTATAA
TTTTCCCACTCAGGGCCATTTTCATTATACAGATTCTGAAATATTGTGTT
TCTGTTTTCATCTGATTCCAGGATTTTACATGTTTTCCCTTCTAACTTAT
TATCAACGCATTGTTCAATATCTTTAACTTGTATTTTCTGCTCTTTCCCT
TGCAGCTAATTGCTAGATCTCCTATTGTGATGAAATAGAATACACAGTTT
TTTGTTACTCATTTTATTGTTGGTAAGACTTGCTTTTGGAGGGTAGAGAG
ATGGGTCAGGGGTTAAGAGCACTGACTGCTCTTCCAGACGTCCTGATTCC
CAGCAACCACGTGGTGGCTCACAACCATCTGTTAAGGGTTGTGATGCCTT
CTGGTCATATAAATAAAATAAATATATTGAAGTTTTTTTTTCATTCAAAT
TTAGTACTTTGGATTAGTAACTATTATACTGGAAATTCAACTAAAAACCT
AAAATTTTGACTTTAGTTAGCAGCAATCTTCTAATCCATATTGTTATCTT
CAAGTATTGCTGAAAAGGGAAACCTATACATGCTTTTAAAAAATACACAA
TTCAGTTTTTATTCAAGCAAATGTGCCCCAACTGCCATAATTCATGTTAT
ACATATAATTCAATGGATGTATA

CCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTAATGGCACACATGTAT
TAGTCCACCTTACATTGCATAGTTGAGCTCCATTTGTTGAGACTCCATAG
ATAGAAATTCACTAAAAAACTTCTGGTGGTGTGTTTCAGCTTCTTGCCAC
TTCTGTGGACTTGGGCTGATTGGCAGAGTGATGTCAGCTGAGACAGACCC
ATGGCGGACACATGATGACTGGAGGATATATAAATAGGACTCAATGGACT
GAGAAGAGCTTGAGAATTCCTGATAGAGCTAGCTGTGCAACACTTGTTGG
CCTCACATTTTTGCTGATCTTTACTTTGGTGAGAGAGACACAGCCCAAGA
ACTTCTCCTGGTGTCCCTGCTGGTCTGAATCCCTCCTGCTGACTCCTCCC
AATTTGACTGAGGCATGGCTGTCTCTGCTAGGTCATGTGACTATGCTGAT
TTGTGTTTACTATTCTGACTCTACTGAGCTGAACTGCTGGTATATTTGTG
AAGTGTTTGCAAGTGGATCTAACTACCACTGACCTATAAACTGAACCACT
GATTTCCTGAAAAGGCAGATGCTATTTGTTCCAAAGAACCATTTCTAAAC
AGGTTCACTTCCCCTGTATCCTTTCTTTCTCACTACCTCTGGTGGGTGGT
TGGCTAGAAGGGAGGTTAAAGCCTTTTTAGAACATCATTAAAAGTAGGTT
TTGAAAAATATTAAAGC

Query= MSMg01no453_h14.b1 MSMg01no453_h14.b1 CHROMAT_FILE:
MSMg01no453_h14.b1 PHD_FILE: MSMg01no453_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:21 2005
         (643 letters)



>mm_chr1_21440950_21441989
          Length = 1040

 Score = 1056 bits (546), Expect = 0.0
 Identities = 624/664 (93%), Gaps = 28/664 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtttggtgttgtttttgaaagtccttgagttatgtattaggttctccgttta 63
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 766 ggaattcagtttggtgttgtttttgaaagtccttgagttacgtattaggttctctgttta 707

                                                                       
Query: 64  agatctctctgatttttttt-aatatgcttgaagctataattttcccactcagggccatt 122
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 706 agatctctctggttttttttaaatatgcttgaagctataattttcccactcagggccatt 647

                                                                       
Query: 123 ttcattatacagattctgaaatattgtgtttctgttttcatctgattccaggattttaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttcattatacagattctgaaatattgtgtttctgttttcatctgattccaggattttaca 587

                                                                       
Query: 183 tgttttcccttctaacttat----------------tatcaacgcattgttcaatatctt 226
           ||||||||||||||||||||                ||||||| ||||||||||||||||
Sbjct: 586 tgttttcccttctaacttattcagcaccctactaaatatcaacacattgttcaatatctt 527

                                                                       
Query: 227 taacttgtattttctgctctttcccttgcagctaattgctagatctcctattgtgatgaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 526 taacttgtattttctgctctttcccttgcagctaattgctagatctcctcttgtgatgaa 467

                                                                       
Query: 287 atagaatacacagttttttgttactcattttattgttggtaagacttgcttttggagggt 346
           ||||||||||||  ||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 466 atagaatacaca-atttttgttactcattt--ttgttggtaagacttgcttttggagggt 410

                                                                       
Query: 347 agagagatgggtcaggggttaagagcactgactgctcttccagacgtcctg------att 400
           |||||||||||||||||||||||||||||||||||||||||||||||||||      |||
Sbjct: 409 agagagatgggtcaggggttaagagcactgactgctcttccagacgtcctgagttcaatt 350

                                                                       
Query: 401 cccagcaaccacgtggtggctcacaaccatctgttaagggttgtgatgccttctggtcat 460
           |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 349 cccagcaaccacatggtggctcacaaccatctgttaagtattgtgatgccttctggtcat 290

                                                                       
Query: 461 ataaataaaataaatatattgaagtttttttttcattcaaatttagtactttggattagt 520
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 289 ataaatgaaataaatatattgaag-ttttttttcattcaaatttagtactttggattagt 231

                                                                       
Query: 521 aactattatactggaaattcaactaaaaacctaaaattttgactttagttagcagcaatc 580
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 230 aactattatactggaaattcagctaaaaacctaaaattttgactttagttagctgcaatc 171

                                                                       
Query: 581 ttctaatccatattgttatcttcaagtattgctgaaaagggaaacctatacatgctttt- 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 170 ttctaatccatattgttatcttcaagtattgctgaaaagggaaacctatacatgcttttt 111

               
Query: 640 aaaa 643
           ||||
Sbjct: 110 aaaa 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1040
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1030
Effective search space:   651990
Effective search space used:   651990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)