BAC Information

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BAC

Clone NameMSMg01-453I14
Chromosome1 (Build37)
Map Location 48,212,443 - 48,247,926
singlet/doubletdoublet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453I14.T7 (MSMg01no453_i14.b1)MSMg01-453I14.TJ (MSMg01no453_i14.g1)
ACCAG540525AG540526
length783766
length of high quality
(start - end)		646 (47 - 692)692 (75 - 766)
definitionCHROMAT_FILE: MSMg01no453_i14.b1 PHD_FILE: MSMg01no453_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:27 2005CHROMAT_FILE: MSMg01no453_i14.g1 PHD_FILE: MSMg01no453_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,212,443 - 48,213,084)(48,247,457 - 48,247,926)
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGACAGCCAGGGATACACAGAGAAATCCTGTCTCGAAAAACC
AAAACCAACCAACCAAACAAACAAAAAAACAAACACAAAACCAAAAACAA
AAAACCAAAACAAAAAACAAAGGAAAGCAAAGAAAAACAAAACAAAAAAA
CTAAAAGAGGTAAAATAAAGGTGTCAGTAAGTTCCCTGGAAGTCTAACAT
ATTCTCAAACTCTGAAAACTTTTATAAGAGTTATGCCCTGGAAAAGCATA
ACTTATAATCTTATGATTTTCAAAATAAAATGCAAAAGGAGTCATATAGT
ACATTACTGTACAGTCATTCATTATTTATTTATTCATTATTGTTATGTGG
ATCATGACATTAGTTCAAGAATTTTGCTTTGTGAAATCTAGGCACCTGCA
TTTAATTCCGGTACTTTGGAGGCAGAGGCAAGCAGATCACCATGAATTCA
AGGATAGCCTGGTCTACAAATTGAGTTCCAGAATATCCAGTGCTATTACA
CAGAGAAAATGAAGAAAAAGAAAAAGAAAAGGAAATAGGGGCTAGGGACA
GAGAAGTTATTTTCTTTGGGGAGACCTTTGCCTAGTTTCTATCATCTGCC
TCTCTCAGCTTTCACACAAAACCCCTTTGTTTCTTTTGCAAACCCTTGTG
AGATTTTATGTTGTTTGACAGCTCATGTTTCTGTGGCAGGGCCTCAAATA
CAGAGTTAGATGTTTTAAAACCTACTTTAATTN

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGAAGCTTTGGATCTATGGTT
AATATTTAAGCTTGGCTATATATTTTAGATAAATAAATACTTAACCAAAT
GTATACTTATATTAATTACCTTCCCTTTGTTGGGTGAAATACCTGGTAAA
TGTAACTTTAAAAGCGAGTGCTTATTTTGGACCATGGCTAAAGGAATCAG
TGAGTTTTGACGGGGAAGGCAGCTGGCCATTTCCTCTGCAATGACTAAAG
AACAATGGAGATTCTTAGCTTACACTGCCTTGTAACTCAGTTCGAAACCC
CTGGTAATGGAATGCAGCCACTGATATATAGGGTAAGTCCTTTCTTAGCA
GTTATCTCATTGCAGCACTTCCTTTCAAATATGCCCAGAGGCATGTTTAG
TCGACATTAAATCATGCCAAGTTAAAAATAAGTATAAAAACTATCATGCT
TTTCCCCATAGCACTAACAACCAACGAGAAAAGAAAGCTTATTCCTATCT
TACATCAATCCCTAAAGTGTTCAGCACGTAGTTCTTTTTTTCCCATAAAT
TCATGATTAGTAGACACTGCTTGGGCTTTGGCGCTAGCAATAGCTGTGAT
TACCAATATACTCCTAAATGTTGTGAATTGTACTTTTCTACTGAAAATCA
CTTAGAGAAATATATGAAGTGAACTAGAAATAGCCATTCCCCTTGGACCT
GTAATTGCTATTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_i14.b1 MSMg01no453_i14.b1 CHROMAT_FILE:
MSMg01no453_i14.b1 PHD_FILE: MSMg01no453_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:27 2005
         (646 letters)



>mm_chr1_48212239_48213284
          Length = 1046

 Score = 1118 bits (578), Expect = 0.0
 Identities = 626/642 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagccagggatacacagagaaatcctgtctcgaaaaaccaaaaccaacc 64
           |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 205 gaattccaggacagccggggatacacagagaaatcctgtcttgaaaaaccaaaaccaatc 264

                                                                       
Query: 65  aaccaaacaaacaaaaaaacaaacacaaaaccaaaaacaaaaaaccaaaacaaaaaacaa 124
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 aaacaaacaaacaaaaaaacaaacacaaaaccaaaaacaaaaaaacaaaacaaaaaacaa 324

                                                                       
Query: 125 aggaaagcaaagaaaaacaaaacaaaaaaactaaaagaggtaaaataaaggtgtcagtaa 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaaagcaaagcaaaacaaaacaaaaaaactaaaagaggtaaaataaaggtgtcagtaa 384

                                                                       
Query: 185 gttccctggaagtctaacatattctcaaactctgaaaacttttataagagttatgccctg 244
           |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 gttctctggaagtccaacatattctcaaactctgaaaacttttataagagctatgccctg 444

                                                                       
Query: 245 gaaaagcataacttataatcttatgattttcaaaataaaatgcaaaaggagtcatatagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaaagcataacttataatcttatgattttcaaaataaaatgcaaaaggagtcatatagt 504

                                                                       
Query: 305 acattactgtacagtcattcattatttatttattcattattgttatgtggatcatgacat 364
           |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 505 acattactctacagtcattcagtattgatttattcattattgttatgtggatcatgacat 564

                                                                       
Query: 365 tagttcaagaattttgctttgtgaaatctaggcacctgcatttaattccggtactttgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 tagttcaagaattttgctttgtgaaatctaggcacctgcatttaattccagtactttgga 624

                                                                       
Query: 425 ggcagaggcaagcagatcaccatgaattcaaggatagcctggtctacaaattgagttcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcagaggcaagcagatcaccatgaattcaaggatagcctggtctacaaattgagttcca 684

                                                                       
Query: 485 gaatatccagtgctattacacagagaaaatgaagaaaaagaaaaagaaaaggaaataggg 544
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 gaatatccagtgctattacacagagaaaatgaagaaaaagagaaagaaaaggaaataggg 744

                                                                       
Query: 545 gctagggacagagaagttattttctttggggagacctttgcctagtttctatcatctgcc 604
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 745 gctagggacagaaaagttattttctttggggagaactttgcctagtttctatcatctgcc 804

                                                     
Query: 605 tctctcagctttcacacaaaacccctttgtttcttttgcaaa 646
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctctcagctttcacacaaaacccctttgtttcttttgcaaa 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_i14.g1 MSMg01no453_i14.g1 CHROMAT_FILE:
MSMg01no453_i14.g1 PHD_FILE: MSMg01no453_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:27 2005
         (692 letters)



>mm_chr1_48246835_48247926
          Length = 1092

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Minus

                                                                        
Query: 222  taaagaacaatggagattcttagcttacactgccttgtaactcagttcgaaacccctggt 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 taaagaacaatggagattcttagcttacactgccttgtaactcagttcgaaacccctggt 1033

                                                                        
Query: 282  aatggaatgcagccactgatatatagggtaagtcctttcttagcagttatctcattgcag 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 aatggaatgcagccactgatatatagggtaagtcctttcttagcagttatctcattgcag 973

                                                                        
Query: 342  cacttcctttcaaatatgcccagaggcatgtttagtcgacattaaatcatgccaagttaa 401
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  cacttcctttcaaatgtgcccagaggcatgtttagtcgacattaaatcatgccaagttaa 913

                                                                        
Query: 402  aaataagtataaaaactatcatgcttttccccatagcactaacaaccaacgagaaaagaa 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  aaataagtataaaaactatcatgcttttccccatagcactaacaaccaacgagaaaagaa 853

                                                                        
Query: 462  agcttattcctatcttacatcaatccctaaagtgttcagcacgtagttctttttttccca 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  agcttattcctatcttacatcaatccctaaagtgttcagcacgtagttctttttttccca 793

                                                                        
Query: 522  taaattcatgattagtagacactgcttgggctttggcgctagcaatagctgtgattacca 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  taaattcatgattagtagacactgcttgggctttggcgctagcaatagctgtgattacca 733

                                                                        
Query: 582  atatactcctaaatgttgtgaattgtacttttctactgaaaatcacttagagaaatatat 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  atatactcctaaatgttgtgaattgtacttttctactgaaaatcacttagagaaatatat 673

                                                              
Query: 642  gaagtgaactagaaatagccattccccttggacctgtaattgctatttgg 691
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  gaagtgaactagaaatagccattccccttggacctgtaattgctatttgg 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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