Query= MSMg01no453_i18.b1 MSMg01no453_i18.b1 CHROMAT_FILE:
MSMg01no453_i18.b1 PHD_FILE: MSMg01no453_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:27 2005
(701 letters)
>mm_chr1_186125296_186126401
Length = 1106
Score = 1091 bits (564), Expect = 0.0
Identities = 635/666 (95%), Gaps = 16/666 (2%)
Strand = Plus / Minus
Query: 41 aaacagtgcaggtgtgagaacaatacgttctgtctgagctgtgcagcacgtgctggaagt 100
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1106 aaacagtgcaggtgtgagaacaatacgttccgtctgagctgtgcagcacgtgctggaagt 1047
Query: 101 gggaagtgaatcagttggctaacgttggtcttcatag-tctacaagacgctggacttgag 159
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 1046 gggaagtgaatcagttggctaacgttggtcttcat-gttctacaagacgctggacttgag 988
Query: 160 cctggcataacttcttatgcctgcatctgtgtaagaatgggtggaaggtggcaaactcct 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 cctggcataacttcttatgcctgcatctgtgtaagaatgggtggaaggtggcaaactcct 928
Query: 220 gtatcagaaagaatgtctcataccagggaagcttctactgttacttggtaggcctaggtc 279
|||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 927 gtatcagaaagaatttctcata---------cttctactgttacttggtaggcctaggtc 877
Query: 280 actctgtcagtataaccccctaggaagaa--ggcttggccacctttctctacagcttcct 337
|||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 876 actctgtcagtacaaacccctaggaagaactggcttggccacctttctctacagcttcct 817
Query: 338 tctgtgcataatggcatctagctttcccaattgagggtggctttgtcctttctttcttgt 397
|||||||| |||||||||||||||| ||| |||| ||||||| ||||||||||||||||
Sbjct: 816 tctgtgcacaatggcatctagctttaccagttgaaggtggctgtgtcctttctttcttga 757
Query: 398 gcctcatctgtccatggttctctatggaccatcggtgtcaccatgaggctgccatctgca 457
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gcctcagctgtccatggttctctatggaccatcggtgtcaccatgaggctgccatctgca 697
Query: 458 agtaaattcatgcccactctcctgatctgtagcctgagacagggatgcctatgcagtgac 517
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agtaaattcatgtccactctcctgatctgtagcctgagacagggatgcctatgcagtgac 637
Query: 518 tctcccagcttccagagctagtaagtgctacagaccagaaacacttagaccagaaactta 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tctcccagcttccagagctagtaagtgctacagaccagaaacacttagaccagaaactta 577
Query: 578 cagtgagcccttggattacacagaaagttaatatagtgacctcattgtcagtagtctctg 637
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 576 cagtgagcccttggattacacagaaagttagtatagtgacctcattgtcagtattctctg 517
Query: 638 atttgctattgtctcttcactcactaatttaacaatggattactgagca---agtatgtc 694
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 516 atttgctattgtctcttcactcattaatttaacaatggattactgagcagcgagtatgtc 457
Query: 695 ccagct 700
||||||
Sbjct: 456 ccagct 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1106
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1096
Effective search space: 757336
Effective search space used: 757336
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_i18.g1 MSMg01no453_i18.g1 CHROMAT_FILE:
MSMg01no453_i18.g1 PHD_FILE: MSMg01no453_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:27 2005
(682 letters)
>mm_chr1_186076945_186078026
Length = 1082
Score = 1241 bits (642), Expect = 0.0
Identities = 672/682 (98%), Gaps = 1/682 (0%)
Strand = Plus / Plus
Query: 2 ttcagcaacacttcatggcttcctgttgcttctggtcttcctccaacctcagaacacaac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttcagcaacacttcatggcttcctgttgcttctggtcttcctccaacctcagaacacaac 261
Query: 62 ccctgagatcgacttctaaaataaatgacttctacaaactcttatcttagggtccatttg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccctgagatcgacttctaaaataaatgacttctacaaactcttatcttagggtccatttg 321
Query: 122 tggggagacccttccttagagtgcttgacttcttgggatatttaacaacaactgaatttt 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggggaggcccttccttagagtgcttgacttcttgggatatttaacaacaactgaatttt 381
Query: 182 gtactttcatttctcagagcaggaaccaacatcaaagagataaaatatcctaataattag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtactttcatttctcagagcaggaaccaacatcaaagagataaaatatcctaataattag 441
Query: 242 tggtatgccaggcagtttgataggtgtcctaacagtcaatgaaccgcttggtcctagcag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggtatgccaggcagtttgataggtgtcctaacagtcaatgaaccgcttggtcctagcag 501
Query: 302 ccaaaggcaagccagattgctggaagtagagtgcccttgtactcacagagaagcctaaga 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 502 ccaaaggcaagccagattgctggaagtacagtgcccttgtactcacagagaagcctaaga 561
Query: 362 gaaccaggaaagttagttacaccggggtgtctcccca-tagaagagataaagtcaatacc 420
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 562 gaaccaggaaagttagttacacaggggtgtctccccagtagaagagataaagtcaatacc 621
Query: 421 tgcatcccatccagagtgcagaaaagagtggattttgttaatgatcttgcagcctttttg 480
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 622 tgcatcccatccagagagcagaaaagagtggattttgttaatgatcttgcggcctttttg 681
Query: 481 ctgtctaggagccagacctcgcccaccttttgttgtagaagctgatctcacccaaattcc 540
|| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 682 ctatctaggagccagacctcgcccaccttttgttgtagaagccgatgtcacccaaattcc 741
Query: 541 cctagtcttttccctccctagaccattacgcatctttaggggagatgtcatttatcactg 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cctagacttttccctccctagaccattacgcatctttaggggagatgtcatttatcactg 801
Query: 601 gctggtctctatgctattggtcagaaaccccagtaggttttaggcctttcagctatagaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gctggtctctatgctattggtcagaaaccccagtaggttttaggcctttcagctatagaa 861
Query: 661 cccaccctcacggtcacatgta 682
||||||||||||||||||||||
Sbjct: 862 cccaccctcacggtcacatgta 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
