NNGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGCTTTCTATTATTTATGTTGTTATTGAAGATCACCC
TTAGTCCATGGTGATCTGATAGGATGCATGGGACAATTTCAGTATTTTTC
TATCTGTTGAGGCCTGTTTTGTGACCAATTATATGGTCAATTTTGGAAAA
GGTCCCGTGAGGTGCTGAGAAGAAGGTAAATCCTTTTGTTTTAGGATAAA
ATGTTCTGTAGATATCTGTTAAGTCCATTTGTTTCATAACTTCTGTTAGT
TTCACTGTGTCCCTGTTTAGTTTCTGTTTCCACGATCTGTCCATGGATGA
GAGTGGTGTGTTGAAGTCTCCCACTATTATTGTGTGAGGTGCAATGTGTG
GTTTGAACTTTACTAAAGTGTCTTTAATGAATGTGGCTGCCCTTGCATTT
GGAGCATAGATATTCAGAAATGAGAGTTTCTCTTGGAAGATTTTACCTTT
GATGAGTATGATAAGTCAAATAACCCCATTAAAAAATGAGGTACAGAACT
AAACAAAGAATTCTCAGCTGAGGAATACCGAATGGCTGAGAAGCACCTGG
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCTACCTCACACCAGTCAAAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATT
G

CGGGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTGGTGACTGAAAG
GACAGGGTCTGCTGGCGAGTGTCCAGTGCAAGATCCAGATGACAGTAATG
GGAGGGGCCAAACATGCAAGACTGCAATGTGGATGGGTCAGTAAAGAGCG
CTGATATCGCGGAAACCTATTGACTGTGATTGGTTAGCACATTACCTCCG
ATTGGACAGGGAGTGCTCACAGCACTGGGGGATCTGTAGAAGAAGCTCGT
AAAAGGGAGTGGAAGGTGTAGCTTCTGGTGTCAGCCGGCCAGCTGCCAGA
GCTACTCACGTTCCTTCAGAATTCAGTGTTCTGACTTCTGGGGATATAGA
GGAGCACGAAGTGCGGTGCTTCTCACTTAGAAGTGCAGTGTGCCACACAG
GTCATGTCTGTATTTTCTCCTTCAGGAGTGTGTGTATGGGGCTGTAAATA
AGAGCGAACTATAGTGATATTACATGTATGGAAATGCTACAATGACCCCC
CCCCCCTTTTAGTTTTGTTTTAAAGACAGAATTTCATGTAGCCCAGTGTA
GTGGCTGGTTTTGTGTATCAACTTGACAGGCTAGAGTTATCACAGAGAAA
GGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTGGGGCATTT
TCTCAATTAGTGACAAGGGGGAGGTCCCTTGTGGGTGGTGCCATCTC

Query= MSMg01no453_k03.g1 MSMg01no453_k03.g1 CHROMAT_FILE:
MSMg01no453_k03.g1 PHD_FILE: MSMg01no453_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:34 2005
         (594 letters)



>mm_chr1_10249493_10250489
          Length = 997

 Score = 1108 bits (573), Expect = 0.0
 Identities = 590/597 (98%), Gaps = 3/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtggtgactgaaaggacagggtctgctggcgagtgtccagtgcaagatccagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgtggtgactgaaaggacagggtctgctggcgagtgtccagtgcaagatccagatga 260

                                                                       
Query: 61  cagtaatgggaggggccaaacatgcaagactgcaatgtggatgggtcagtaaagagcgct 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cagtaatgggaggggccaaacatgcaaggctgcaatgtggatgggtcagtaaagagcgct 320

                                                                       
Query: 121 gatatcgcggaaacctattgactgtgattggttagcacattacctccgattggacaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatcgcggaaacctattgactgtgattggttagcacattacctccgattggacaggga 380

                                                                       
Query: 181 gtgctcacagcactgggggatctgtagaagaagctcgtaaaagggagtggaaggtgtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctcacagcactgggggatctgtagaagaagctcgtaaaagggagtggaaggtgtagc 440

                                                                       
Query: 241 ttctggtgtcagccggccagctgccagagctactcacgttccttcagaattcagtgttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctggtgtcagccggccagctgccagagctactcacgttccttcagaattcagtgttct 500

                                                                       
Query: 301 gacttctggggatatagaggagcacgaagtgcggtgcttctcacttagaagtgcagtgtg 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacttctgggaatatagaggagcacgaagtgcggtgcttctcacttagaagtgcagtgtg 560

                                                                       
Query: 361 ccacacaggtcatgtctgtattttctccttcaggagtgtgtgtatggggctgtaaataag 420
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ccacacaggtcatgtctgcattttctccttcaggagcgtgtgtatggggctgtaaataag 620

                                                                       
Query: 421 agcgaactatagtgatattacatgtatggaaatgctacaatgaccccccccccc---ttt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 621 agcgaactatagtgatattacatgtatggaaatgctacaatgaccccccccccccctttt 680

                                                                       
Query: 478 tagttttgttttaaagacagaatttcatgtagcccagtgtagtggctggttttgtgtatc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagttttgttttaaagacagaatttcatgtagcccagtgtagtggctggttttgtgtatc 740

                                                                    
Query: 538 aacttgacaggctagagttatcacagagaaaggagcttcagttgaggaaatgcctcc 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacttgacaggctagagttatcacagagaaaggagcttcagttgaggaaatgcctcc 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 997
Length adjustment: 10
Effective length of query: 584
Effective length of database: 987
Effective search space:   576408
Effective search space used:   576408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)