Query= MSMg01no453_k06.b1 MSMg01no453_k06.b1 CHROMAT_FILE:
MSMg01no453_k06.b1 PHD_FILE: MSMg01no453_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:35 2005
(691 letters)
>mm_chr1_9909679_9910769
Length = 1091
Score = 1162 bits (601), Expect = 0.0
Identities = 654/683 (95%), Gaps = 21/683 (3%)
Strand = Plus / Plus
Query: 9 gaattctagatacttcaccttatcttggaaagacttttcaaaagaaggaaactgttgaag 68
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctagatacttcagcttatcttggaaagacttttcaaaagaaggaaactgttgaag 268
Query: 69 aaagcaagcaacataaacgaacagtttggtgaccatttttatgtattgtgaagtacttca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaagcaagcaacataaacgaacagtttggtgaccatttttatgtattgtgaagtacttca 328
Query: 129 tgacttacttgtttgttttcagaacacagcttatatgcaggtggaaagtctgctttctta 188
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgatttacttgtttgttttcagaacacagcttatatgcaggtggaaagtctgctttctta 388
Query: 189 tgttgaactctaggattcaagtgttagactacgataggccttcctagagatctgtgccgt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgttgaactctaggattcaagtgttagactacgataggccttcctagagatctgtgccgt 448
Query: 249 gagcgctgcccaggagctagcagagctatcacacacagcttctcctctaacattcacctt 308
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gagcgctgcccaggggctagcagagctatcacacacagcttctcctctaacattcacctt 508
Query: 309 tcttaggagctggatagaatcagggtggagaacatttagactattacagtgtggcacagt 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcttaggagctggatagaatcagggtggagaacatttagactattacagtgtggcacagc 568
Query: 369 gcagttatttcagagtaggaaaatacaatccttcaaccacagcaccctgggtacttcctg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gcagttatttcagagtaggaaaatacaatccttcaaccacagcaccctgggtacttcctg 628
Query: 429 ataggagcaaagacagcagtattgaagccccatccctgctgcctcacacatgactgcaga 488
|||||||| | | || |||||||||||||||||| ||||||||
Sbjct: 629 ataggagc-----c-----t----------ca-ccctgctgcctcacacataactgcaga 667
Query: 489 ggagaacagatgattggctttcagctcacaactcattcatgtgggggtgtgagggaactg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggagaacagatgattggctttcagctcacaactcattcatgtgggggtgtgagggaactg 727
Query: 549 gggtaagaaacgatggacaagcattgtcaccaatcataatatcataaaatttattttgaa 608
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 728 gggtaagaaacgatggacaagcattgtcaccaatcgtaatatcataaaatttattttgaa 787
Query: 609 attattttgaataaaggaatccaatacctgtcctctttattttctttcagttccttcagg 668
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 788 attattttgaataaaggaatccaatacctgtcctctttattttctttcagttcctttagg 847
Query: 669 aattagtgacaactttagacgtc 691
|||||||||||||||||| ||||
Sbjct: 848 aattagtgacaactttaggcgtc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_k06.g1 MSMg01no453_k06.g1 CHROMAT_FILE:
MSMg01no453_k06.g1 PHD_FILE: MSMg01no453_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:35 2005
(622 letters)
>mm_chr1_10034498_10035512
Length = 1015
Score = 1048 bits (542), Expect = 0.0
Identities = 598/620 (96%), Gaps = 7/620 (1%)
Strand = Plus / Minus
Query: 1 ttgctatatagattaggctggcctcaaactacagcaattcaaaggtctctgcctcccaaa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ttgctatatagattagactggcctcaaactacagcaattcaaaggtctctgcctcccaaa 841
Query: 61 tgctgcgattgaaggagtaaaccactaaatccaatttaatgaaacacactgcaagacaat 120
|||||||||| |||||||||||||||||||| |||||||||||||||| | || ||||||
Sbjct: 840 tgctgcgattaaaggagtaaaccactaaatctaatttaatgaaacacattacacgacaat 781
Query: 121 tactaatcttgccttcatctccatgtaaggtggatcactttccaattctgctttgtcttt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 780 tactaatcttgccttcatctccatgtacggtggatcactttccaattctgctttgtcttt 721
Query: 181 ggccagtttcgctttttgctcttcaataaattcatccaagctatctgccattttgtagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ggccagtttcgctttttgctcttcaataaattcatccaagctatctgccattttgtagat 661
Query: 241 tctgaaaaaaaaaaaagtcttcagtgagtacaatgatattgcagtggttttagctaagta 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctg--aaaaaaaaaagtcttcagtgagtacaatgatattgcagtggttttagctaagta 603
Query: 301 ttaaaacaaggtcttagttcacaattatcatattgtaaacaaggtcttcaatctcaatta 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttaaaacaaggtcttagtccacaattatcatattgtaaacaaggtcttcaatctcaatta 543
Query: 361 tcatattgtgaacttcatactgaagcatagacataaataccatctgtctcttcctcttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcatattgtgaacttcatactgaagcatagacataaataccatctgtctcttcctcttca 483
Query: 421 atttcccagaataggctacaatgcaggttaatgtacagaaaaagaaatatggtcaaagta 480
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 482 atatcacagaataggctacaatgtaggttaatgtacagaaaaagaaatatggtcaaagta 423
Query: 481 ctttatatgcatgaatggaaactttgcaatgaaacagtctatacaattatatgattaaaa 540
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 422 ctttatatgcatgaatggaaacttcgcaatgaaacagtctatacaattatatgatttaaa 363
Query: 541 aaaaaaaagtagtaacaaatgagatcggcagccactaccacaatccaccgtcacacaatc 600
||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 362 aaa-----gtagtaacaaatgagatcggcagccactaccacaacccacagtcacacaatc 308
Query: 601 aaagaacaaaaggaaatgaa 620
||||||||||||||||||||
Sbjct: 307 aaagaacaaaaggaaatgaa 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1015
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1005
Effective search space: 615060
Effective search space used: 615060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
