NCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCGAGAGGA
TGCGCGGAATTCTTTGGTTACCTCTGAGCCCCATTTTAAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTATCGATTCTTGATCTTATAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTTGAGGCTTTTC
CCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATTTGGAGTTC
CTTAATCCACTTAGATTTGACCTAAGTACATGGAGATAAAAATGGATCAA
TTCGCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGATTTTAGCTCCCTTGTCAAAGAT
GAAGTGACCATAGGTGTGTGGGTTCACCTCTGGGTCTTCAATTTCTGTTC
CATTGGGCCACTTGTCTGTCACTATATCAGTACCCATGTTTTTTGATTTA
TATTGCTCTGTAGTACAGTTTTAGGTCCGGTATGGCGGATCCACCAGAGT
TTCTTATCACCCTGATA

GTGGGACGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATGTGGTTAATGC
AATGTAATTATTCATAGGTATAAAATGTAAGGATAAATACATTTATACAG
AATAGATATTAGAGAATAATTTTAAAAATTGAAAATGATGGGAATTCCAT
AATGTTTCTGGCTATATGTATGATTAAATGAGTTAATGTAATGGAGTTTT
TTTCTGAAAATTTTTTAACTGTTAGAGTACTTTGCCATGTTTTATTCACT
TTTATAGTTGAGTTTTGAGTATTATAACTACATCATGAAAAGTACACAAA
GGCTGTGATAAAAAGAAATGGGTGAATCGCTACAAAAGTGAAAGAAATTG
AATAGCCAGATAAAATATACATATACTTTTGAGTATAAAATTTAATGTAA
AGAAACAAGTCATATGTGAACGTGGTACGCTCTCCAGCCAAGTCAACTGG
ACAGGGCGAAAGGCTTAAAAGTCACTCATGAGGCATAAGAGCTTCAAGGA
AGCTCTCCTTCTGAGGCTAGCGTTCCCTACCCATACAGTAATTTTTTATT
CCCGCGTTCCCTTTCCCGTGTTAGTCTAGTGTATGGACCCCCGTGGTCCC
TTTCACAACTTTCCCATCATATAGGCCCCCACAAATTGAATTTCTGACCT
AATTTATCTCTTTCTTTT

Query= MSMg01no454_a05.g1 MSMg01no454_a05.g1 CHROMAT_FILE:
MSMg01no454_a05.g1 PHD_FILE: MSMg01no454_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:04 2005
         (448 letters)



>mm_chr1_29768825_29769675
          Length = 851

 Score =  803 bits (415), Expect = 0.0
 Identities = 441/451 (97%), Gaps = 3/451 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagaaatgtggttaatgcaatgtaattattcataggtataaaatgtaaggataaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgcagaaatgtggttaatgcaatgtaattattcataggtataaaatgtaaggataaatac 534

                                                                       
Query: 61  atttatacagaatagatattagagaataattttaaaaattgaaaatgatgggaattccat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 533 atttatacagaatagatattagagaataattttaaaaattgaaaatgatgggaattcctt 474

                                                                       
Query: 121 aatgtttctggctatatgtatgattaaatgagttaatgtaatggag---tttttttctga 177
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 473 aatgtttctggctatatgtatgattaaatgagttaatgtaatggagttttttttttctga 414

                                                                       
Query: 178 aaattttttaactgttagagtactttgccatgttttattcacttttatagttgagttttg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaattttttaactgttagagtactttgccatgttttattcacttttatagttgagttttg 354

                                                                       
Query: 238 agtattataactacatcatgaaaagtacacaaaggctgtgataaaaagaaatgggtgaat 297
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agcataataactacatcatgaaaagtacacaaaggctgtgataaaaagaaatgggtgaat 294

                                                                       
Query: 298 cgctacaaaagtgaaagaaattgaatagccagataaaatatacatatacttttgagtata 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 293 cgctacaaaagtgaaagaaattgaatagccagataaaatatacatatacttttgagtatg 234

                                                                       
Query: 358 aaatttaatgtaaagaaacaagtcatatgtgaacgtggtacgctctccagccaagtcaac 417
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 233 aaatttaatgtaaagaaacaagtcatatgtgaatgtgctacgctctccagccaagtcaac 174

                                          
Query: 418 tggacagggcgaaaggcttaaaagtcactca 448
           |||||||| ||||||||||||||||||||||
Sbjct: 173 tggacaggccgaaaggcttaaaagtcactca 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 851
Length adjustment: 10
Effective length of query: 438
Effective length of database: 841
Effective search space:   368358
Effective search space used:   368358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)