Query= MSMg01no454_f19.b1 MSMg01no454_f19.b1 CHROMAT_FILE:
MSMg01no454_f19.b1 PHD_FILE: MSMg01no454_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:31 2005
(568 letters)
>mm_chr1_17636344_17637311
Length = 968
Score = 578 bits (299), Expect = e-169
Identities = 308/311 (99%)
Strand = Plus / Minus
Query: 257 taaaatgaagagatctcttatgctcatggattggcagaaccaacatagtaaaagtggcca 316
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 taaaatgaagagatctctcatgctcatggattggcagaaccaacatagtaaaagtggcca 909
Query: 317 tcctgccaagggcaatctacagattcactgcagtacccatcaaaatcccaacacagttct 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tcctgccaagggcaatctacagattcactgcagtacccatcaaaatcccaacacagttct 849
Query: 377 tcagagacatggaaagagcaattctcaaattcatctggaaaggcaaaaagccaagaatag 436
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 848 tcagagacatggaaagagcaattctcaaattcatctggaaaggcaaaaagcccagaatag 789
Query: 437 caaaaaacagttcttaacaatgccaagaatttggcatttactcatgagatctggtacaac 496
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctaaaaacagttcttaacaatgccaagaatttggcatttactcatgagatctggtacaac 729
Query: 497 tggattgaaatttgaggaaaaagtaggttaccacctgtcatttaagcagtgctgcatttt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tggattgaaatttgaggaaaaagtaggttaccacctgtcatttaagcagtgctgcatttt 669
Query: 557 ctatatttagg 567
|||||||||||
Sbjct: 668 ctatatttagg 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_f19.g1 MSMg01no454_f19.g1 CHROMAT_FILE:
MSMg01no454_f19.g1 PHD_FILE: MSMg01no454_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:32 2005
(241 letters)
>mm_chr1_17449414_17450054
Length = 641
Score = 429 bits (222), Expect = e-125
Identities = 237/242 (97%), Gaps = 2/242 (0%)
Strand = Plus / Plus
Query: 1 aaaattcatatcagttacattttatgctttgtgctagcaaatctataaaatgaatggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaattcatatcagttacattttatgctttgtgctagcaaatctataaaatgaatggtga 260
Query: 61 tatattagggaaggacaagatggaatgatgtagtctctgaggctgtagctgtctttaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catattagggaaggacaagatggaatgatgtagtctctgaggctgtagctgtctttaaaa 320
Query: 121 aa-ttgttgggggggggctaggtgaagagaaaggagtggaagctacgatctggatgtaaa 179
|| ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aaattgttggggggcg-ctaggtgaagagaaaggagtggaagctacaatctggatgtaaa 379
Query: 180 gtaaataaatcacttaatcaagaaaaataatttgagacaggttccttcctgcctccatct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaaataaatcacttaatcaagaaaaataatttgagacaggttccttcctgcctccatct 439
Query: 240 gc 241
||
Sbjct: 440 gc 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
