Query= MSMg01no454_n09.b1 MSMg01no454_n09.b1 CHROMAT_FILE:
MSMg01no454_n09.b1 PHD_FILE: MSMg01no454_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:09 2005
(242 letters)
>mm_chr1_120773438_120774078
Length = 641
Score = 400 bits (207), Expect = e-116
Identities = 231/239 (96%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 1 agtgagagacctagggcaggaagatggtgacatggggctcccaaagtcctggctcatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgagagacctagggcaggaagatggtgacatggggctcccaaagtcctggctcatccc 260
Query: 61 cagtgccattttttgactcagttcaaggtcactcgactacactggaagtaagaagtacat 120
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgccatttttggactcagtacaaggtcactcgactacactggaagtaagaagtacat 320
Query: 121 gggactagaaaaaaaaatccacatcaataataatatataaaataagctagtgttttgaaa 180
|||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 321 gggactagaaaaaaaa-tccacatcaataataatatataaaataagccagtggtaggaaa 379
Query: 181 agattagaaacacttggttgcctggacttcatacaacacacagaacaagaaaagctcac 239
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agactagaaacacttggttgcctggacttcatacaacacacagaacaagaaaagctcac 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space: 147256
Effective search space used: 147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_n09.g1 MSMg01no454_n09.g1 CHROMAT_FILE:
MSMg01no454_n09.g1 PHD_FILE: MSMg01no454_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:10 2005
(415 letters)
>mm_chr1_120962949_120963763
Length = 815
Score = 733 bits (379), Expect = 0.0
Identities = 406/415 (97%)
Strand = Plus / Minus
Query: 1 ttgatccttctgcttctacctgccgagtactagaatataggcacacggcaccatccctgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 748 ttgatccttctgcttctacctgccgagtactagaatataggcacagggcaccatccctgg 689
Query: 61 tttatacagtactagacagatccctttgtgcgtgataggcaagcagtctatccgctgatc 120
||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 688 tttatgcagtactagacagatccctttgtgtgtgataggcaagcagtctattcgctgatc 629
Query: 121 ttcgtccgcagcctttggtgcttagttctttttgctttgttttgtttcatgattgctgga 180
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctcgtccccagcttttggtgcttagttctttttgctttgttttgtttcatgattgctgga 569
Query: 181 ccaatgctctgccactgggattaagcatagccctctctgatttaatgaacatttctggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccaatgctctgccactgggattaagcatagccctctctgatttaatgaacatttctggat 509
Query: 241 tcctgcctcaaagcctgggataagtgctgattacagaaatgaagtggggacctttgtcac 300
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 508 tcctgcctcaaagcctgggataagtgctgagcacagaaatgaagtggggacctttgtcac 449
Query: 301 ctttggggagcaggtcaaacccagaagaggctgacaggtcagtagacatctttctaaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctttggggagcaggtcaaacccagaagaggctgacaggtcagtagacatctttctaaggc 389
Query: 361 aggatacatgttgagaatgatgacatcgtacatggaggatggcaatggagcccac 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aggatacatgttgagaatgatgacatcgtacatggaggatggcaatggagcccac 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
