BAC Information

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BAC

Clone NameMSMg01-455E04
Chromosome1 (Build37)
Map Location 43,901,439 - 43,901,957
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1
Downstream geneLOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455E04.T7 (MSMg01no455_e04.b1)MSMg01-455E04.TJ (MSMg01no455_e04.g1)
ACCAG541842AG541843
length716733
length of high quality
(start - end)
519 (45 - 563)545 (77 - 621)
definitionCHROMAT_FILE: MSMg01no455_e04.b1 PHD_FILE: MSMg01no455_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:43 2005CHROMAT_FILE: MSMg01no455_e04.g1 PHD_FILE: MSMg01no455_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGTTTTCTTGGCTCCTGTACAAACAACTCCATTGTTAGGGGTGGC
TAATAGTGGGACTGTCCACCAGCTAATTACTACTCACTCTAACAAGCTGT
CAGTTCTTATGACTGTCATTGTGCCTGCACTGGCTATTTCTTACCTCACA
ACTTGCTAAGTAAGCATCTTTGAGCAGAGACAATGAGCCAGTTAAATATT
GGAAATACACCAAACAAGGACTGGTCTATTTAACCTACCTCAACCGATTT
CCTGATTCTTCAGAAACCCTGAAGTTTTCAAAGTGAACTCTGTGAGTCTA
TTCTGGTGTGATGCTGCATACCTATAATAATAGCAATCAAGAGGCAGAGG
CAGGAGGATTGCAAGCTTGAGGTCAGCCTGAGCTACATAGTGATATGCTA
TCTCATAAAATAGAATAAAAGGAACAGTTCAGAGGCCCACCTGCCCTTAG
AACTTTCCCACACCCTCAGTTTGAATCCCAGGAAAACCTAACTAAGAAGG
TCCCCAATATCAAATTGGTAGTACCTTAGTTGGGGTTTCTAATGTCATGA
AGAGACCCCATGAACTTAGCAACTCTTATAAAGTAAAGTATTTAGTTAGG
GCTGGCCTACCAGTTGTAAGTTTTAAGCCCATTACCTTCAGGGGGAAACC
ACAATGCCCATGCAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACCTGCTCATCAGGCAACATT
ACTAAGTGTCGCGTCTGCTCTCGACCAGCAAGAACGACACAACCACCAGT
CCTTCTAACAGCAGTTTATTCAGCAAACTTCCGTCTTCATCTCTCTCGAT
TCAACTTTTTCTTTCTCAACTTTATCTCTCTCTCTAACCCGGGCCTCTCA
CTCTTATATACTCTCAGCCCTCATCCACTCTCGGCAGGCCATGTCACCTC
ACCAGGCACACAGCTTCAGCTAATCAGGGCAGCAGGGGCATGTCTACACC
AAAATGGATTCACCAGCATCCTGGTGCACCTATGCAGCTCTCACGGTGGT
TGTGGCTTATTTTCAGGGGTGGCTTATTTTCAGGAAGTCAGGTGCAAGTC
ATAAGACTTAGCTGCAGTCCCTGGCGCTTTCTTGGGACTGCTGCCACACC
CGCTCCTCACATCTCCCCCTTTTTTTCTTTTTTGGCAGAGAGAATGTCTG
GCTTTGATTGCCCCCTGCAGCAATGCCCCTTACTCATCCTCAGGAGACAA
ACAGCATTGGTTTGATCCCTGTCTTAGGGTGGCGACATGCCCAGGGAGTC
TTATCCGTCACTGACTACTTCTCTATCATGCAAAACCCAGTTTGGGGAGA
TTGTCCTGGTTGCTTGCAGAAGGCGCCTCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_e04.b1 MSMg01no455_e04.b1 CHROMAT_FILE:
MSMg01no455_e04.b1 PHD_FILE: MSMg01no455_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:43 2005
         (519 letters)



>mm_chr1_43901431_43902353
          Length = 923

 Score =  424 bits (219), Expect = e-122
 Identities = 448/525 (85%), Gaps = 15/525 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattct-ggttttcttggctcctgtacaaa-caactccattgttaggggtggctaata 61
           |||||||| || || | |||| |||| ||||| || ||||| ||| |||| | |||||| 
Sbjct: 527 ggaattctggggttgc-tggcccctgcacaaagcagctccaatgtgagggatagctaatg 469

                                                                       
Query: 62  gtgggactgtcca-ccagctaattactactcactctaacaagctgtcagttcttatgact 120
           ||||| |||  ||  |||||||  |||||||| |||| |||||| |||||||||||| ||
Sbjct: 468 gtggggctg-gcagtcagctaacgactactcattctatcaagctctcagttcttatggct 410

                                                                       
Query: 121 gtcattgtgcctgcactggctatttcttacctcacaacttgcta--agtaagcatctttg 178
           |||| ||||||| |||||||||||||| ||||||||| || |||  | ||||||||||||
Sbjct: 409 gtcaatgtgcctacactggctatttctcacctcacaatttcctaccactaagcatctttg 350

                                                                       
Query: 179 agcagagacaatgagccagttaaatattggaaataca-ccaaacaaggactggtctattt 237
           | | |||||| | ||||| ||||||||||||||||||  |||||||||||||||||||||
Sbjct: 349 aactgagacattaagccaattaaatattggaaatacatacaaacaaggactggtctattt 290

                                                                       
Query: 238 aacctacctcaaccgatttcctgattcttcagaaaccctgaagttttcaaagtgaactct 297
           |||| ||||||||| ||||||||||||||||||||||||||||||| || |||||  |||
Sbjct: 289 aacccacctcaacccatttcctgattcttcagaaaccctgaagtttccagagtgaggtct 230

                                                                       
Query: 298 gtgagtctattctggtgtgatgctgcatacctataataatagcaatcaagaggcagaggc 357
           |||||||||| | |||| |||||||| |||||||||||| | |||||||||||| | |||
Sbjct: 229 gtgagtctatccaggtgcgatgctgcctacctataataacaacaatcaagaggctgtggc 170

                                                                       
Query: 358 aggaggattgcaagcttgaggtcagcctgagctacatagtgata-tgctatctcataaaa 416
           |||||||||| |||||||||| || ||||||||||||||||||| | || ||||| ||||
Sbjct: 169 aggaggattgaaagcttgaggccatcctgagctacatagtgatact-ctgtctcaaaaaa 111

                                                                       
Query: 417 tagaataaaaggaacagttca-gaggcccacctgcccttagaactttcccacaccctcag 475
           || |||| | |||||||  || ||||||||| ||||||| |||||||||||  || ||||
Sbjct: 110 taaaatata-ggaacaga-caagaggcccacttgcccttggaactttcccatgccttcag 53

                                                        
Query: 476 tttgaatcccaggaaaacctaactaagaaggtc-cccaatatcaa 519
           |||| ||||||||| | ||||||||||||| || ||||| |||||
Sbjct: 52  tttggatcccaggacatcctaactaagaagatctcccaa-atcaa 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 923
Length adjustment: 10
Effective length of query: 509
Effective length of database: 913
Effective search space:   464717
Effective search space used:   464717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)