Query= MSMg01no455_k12.b1 MSMg01no455_k12.b1 CHROMAT_FILE:
MSMg01no455_k12.b1 PHD_FILE: MSMg01no455_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:14 2005
(507 letters)
>mm_chr1_183047647_183048553
Length = 907
Score = 888 bits (459), Expect = 0.0
Identities = 500/523 (95%), Gaps = 16/523 (3%)
Strand = Plus / Plus
Query: 1 gtttaaaaaattcagactccatgactattagtagaagtaaattcctaattaaaaaaaaa- 59
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtttaaaaaattcagactccacgactattagtagaagtaaattcctaattaaaaaaaaaa 244
Query: 60 -gtaaattcctacctatatttacttgaaagcttatacattaatctgtactgatggtatca 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agtaaattcctacctatatttacttgaaagcttatacattaatctgtactgatggtatca 304
Query: 119 taatgaatgctatataagatgaaacaaatcactgaataaatgctcactactctaactaca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 taatgaatgctatataagatgaaacaaatcactgaataaatgctcactactctaactaca 364
Query: 179 tacccagctttattccagaaaagcttatgctaatatctgtgaattgggaactatgctgtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tacccagctttattccagaaaagcttatgctaatatctgtgaattgggaactatgctgtg 424
Query: 239 tactgtattgacaataagcacaggttggtttgtttcctttatccactttttagtgttttg 298
|||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 425 tactataaagacaataagcacaggttggtttgtttcctttatccacttttaagcgttttg 484
Query: 299 caa--------------tattgtagaggaaatagcttgtgggggacatacttacagagca 344
||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 485 caagtgtattgcaagtgtattgtagaggaaatagcttgtgcgggacatacttacagagca 544
Query: 345 aataaaatatgtacttaccagaaagagaaacctactcaaaccatactttatactagtact 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aataaaatatgtacttaccagaaagagaaacctactcaaaccatactttatactagtact 604
Query: 405 acatgtctgtccccctactccacccttgaaatgaggtcttagtatgtacgtagcccttgt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acatgtctgtccccctactccacccttgaaatgaggtcttagtatgtacgtagcccttgt 664
Query: 465 tggcctgcaacttggtatgtagagcaggctgatcctgaactca 507
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tggcctgcaacttggtatgtagagcaggctgatcctgaactca 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_k12.g1 MSMg01no455_k12.g1 CHROMAT_FILE:
MSMg01no455_k12.g1 PHD_FILE: MSMg01no455_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:14 2005
(234 letters)
>mm_chr1_183177612_183178245
Length = 634
Score = 398 bits (206), Expect = e-115
Identities = 233/256 (91%), Gaps = 22/256 (8%)
Strand = Plus / Minus
Query: 1 tccgctgaccctgctgccatgcttggggctgggcaagatggtagctgcttctctttggcc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 tccgctgaccctgctgccatgcttgggcctgggcaagatggtagctgcttctctttggcc 324
Query: 61 cggtagtctttgggactgtgccttagcatcgtaccctctcctgtctctcagatgatgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cggtagtctttgggactgtgccttagcatcgtaccctctcctgtctctcagatgatgagc 264
Query: 121 attttcccaaatgggttcatcgcatccatgtcctagggcacgtgtggcccttttgcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attttcccaaatgggttcatcgcatccatgtcctagggcacgtgtggcccttttgcctgt 204
Query: 181 a----------------------tcgaggctgcttgggggaaggtcttctggccagaggc 218
| |||||||||||||||||||||||||||||||||||||
Sbjct: 203 atcagtgagtgtctcatgcagactcgaggctgcttgggggaaggtcttctggccagaggc 144
Query: 219 aggtggacatggagga 234
||||||||||||||||
Sbjct: 143 aggtggacatggagga 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
