BAC Information

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BAC

Clone NameMSMg01-455O05
Chromosome1 (Build37)
Map Location 194,197,788 - 194,198,432
singlet/doubletsinglet
Overlap geneKcnh1
Upstream genePpp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455O05.T7 (MSMg01no455_o05.b1)MSMg01-455O05.TJ (MSMg01no455_o05.g1)
ACCAG542320AG542321
length721726
length of high quality
(start - end)
159 (322 - 480)645 (78 - 722)
definitionCHROMAT_FILE: MSMg01no455_o05.b1 PHD_FILE: MSMg01no455_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:31 2005CHROMAT_FILE: MSMg01no455_o05.g1 PHD_FILE: MSMg01no455_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCG
GAATTCTATTACCACTTTTTTATTCACATGAGTTTATTCTGATTCACCCC
TTTGCCCATAATCTTAGCCCCGTCTCACTGAAATCCTTCCTCCCTACAAA
CAGCCCCACTTCTGCTTGCCTGCCTTGTGTGCTTCACTACTCCCTTACCC
TCCTCCTCACTTCCTTCCTTTTCATTGTCCTCCTTTCTACCTTCAACACA
CACATACTCACATATACACAGACATACACATATACATATACACACAAACA
TACACACATATTCATATTTAGACACACATACACACTCATATATATATATA
TATATATATAAACATACACACAAACACATATACTCACATACACACTCACA
TATGCACACACACATATACACATATACACACAAACATACACACATACACA
TATACACACAAACATACACACATACACATAGACACACATAGACACACATA
CACACTCATATATAGAGAAACATACATCCATAAACACTCACATATACTCA
CATACACACTCACATATGCACACACACATATACACATAAACATACTCTCA
TACATACACATATACACACACACTTCCATGCACACATATACTCATACCTA
TACCCCCACTCATGTATACATGCACATACACACAAACACACACATACCCT
AATATACACACATCATACACC
NCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATACTTAGGATCCAGCACTTAG
GAGGAAGAGCAGCCAGCATAGGCTATGTGTGAGGCTGTCTTTAAGACAAA
CGGATTTCAAAGGTAGGAGCAGCCAGGTGTCTCTGCAGGAAAAGACACTT
GATGTCAAACCTGGTGACATGCATTTGACTCCTGGGGCAAGTTGTCCTCT
GGCCTCACAGGGCACCGCCATATGTGTGCTCTCCTCACCCACAAAACAAA
CAGATGTAGAACACTTTCTTTTTGTTTATAAGAAGGTGGAACCAGGTGGA
GTTAGGGGCACAAAATAGGACGTGAAAAGGATCGGATTATATAGCATGAA
GTTCTCAGAGAACTAATAAAAATACTATATTAAAAAAGTACAAGTGTGGT
GAAGAAAGTGGATCCCATCCCCCACAAACTTGTTAATTAACCAGAGTTCA
CTGATCCTCAACTTCTTATGATACACACGATAAAAATCAATACTTTCTAG
AAGATTAAAGTTTTAAATAAAATTCAAATGTTTCACCTGACAAAATGTGT
ATGGAAAATTTATGGAGAAAATTATCAAGCCTTCATCATAGGAATTTAAA
ATTTTTGGAATAAATTGTTAAGTATAATAACACCATTATTAAGACATTAA
TTTTTCCTGATTTACTACTGCATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_o05.g1 MSMg01no455_o05.g1 CHROMAT_FILE:
MSMg01no455_o05.g1 PHD_FILE: MSMg01no455_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:31 2005
         (645 letters)



>mm_chr1_194197588_194198632
          Length = 1045

 Score = 1178 bits (609), Expect = 0.0
 Identities = 636/645 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacttaggatccagcacttaggaggaagagcagccagcataggctatgtgtgaggctg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 catacttaggatctagcacttaggaggaagagcagccagcataggctatgtgtgaggctg 786

                                                                       
Query: 61  tctttaagacaaacggatttcaaaggtaggagcagccaggtgtctctgcaggaaaagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 785 tctttaagacaaacggatttcaaaggtaggagcagccaggtgtctctgcaggacaagaca 726

                                                                       
Query: 121 cttgatgtcaaacctggtgacatgcatttgactcctggggcaagttgtcctctggcctca 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 725 cttgatgtcaaacctggtgacatgcatttgacttctggggcaagttgtcctctggcctca 666

                                                                       
Query: 181 cagggcaccgccatatgtgtgctctcctcacccacaaaacaaacagatgtagaacacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cagggcaccgccatatgtgtgctctcctcacccacaaaacaaacagatgtagaacacttt 606

                                                                       
Query: 241 ctttttgtttataagaaggtggaaccaggtggagttaggggcacaaaataggacgtgaaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctttttgattataagaaggtggaaccaggtggagttaggggcacaaaataggacgtgaaa 546

                                                                       
Query: 301 aggatcggattatatagcatgaagttctcagagaactaataaaaatactatattaaaaaa 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aggatcggattatatcgcatgaagttctcagagaactaataaaaatactatattaaaaaa 486

                                                                       
Query: 361 gtacaagtgtggtgaagaaagtggatcccatcccccacaaacttgttaattaaccagagt 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtacaagtgtagtgaagaaagtggatcccatcccccacaaacttgttaattaaccagagt 426

                                                                       
Query: 421 tcactgatcctcaacttcttatgatacacacgataaaaatcaatactttctagaagatta 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 tcactgatcctcaacttcttatgatacacatgataaaaatcaatactttctagaagatta 366

                                                                       
Query: 481 aagttttaaataaaattcaaatgtttcacctgacaaaatgtgtatggaaaatttatggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aagttttaaataaaattcaaatgtttcacctgacaaaatgtgtatggaaaatttatggag 306

                                                                       
Query: 541 aaaattatcaagccttcatcataggaatttaaaatttttggaataaattgttaagtataa 600
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 305 aaaattatcaagccttcatcataggaattttaaatttttggaataaatcgttaagtataa 246

                                                        
Query: 601 taacaccattattaagacattaatttttcctgatttactactgca 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taacaccattattaagacattaatttttcctgatttactactgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)