BAC Information

Click to search

BAC

Clone NameMSMg01-456H02
Chromosome1 (Build37)
Map Location 61,730,965 - 61,731,451
singlet/doubletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456H02.T7 (MSMg01no456_h02.b1)MSMg01-456H02.TJ (MSMg01no456_h02.g1)
ACCAG542744AG542745
length738829
length of high quality
(start - end)
491 (46 - 536)196 (80 - 275)
definitionCHROMAT_FILE: MSMg01no456_h02.b1 PHD_FILE: MSMg01no456_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:16 2005CHROMAT_FILE: MSMg01no456_h02.g1 PHD_FILE: MSMg01no456_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATATTAATGGAGACATATAGTCACAACAGTGATGTAAAAGAGTT
TCAGCGAATGCTGGTAAGTTGTCATGTAAATGCATCTTCTGACCTTTGTG
CATCCATTGGTATTGGTGCAAAGGGTCTAACTGTCAATGAAGGAGCAGCT
AGCAGGTGAAATTCAGACTGTCGTGGCTGGGAAGGGACAAGGGACTAGGA
ACTTGTGGTAAAGGACCTTTTTGTCCGTGACTGTTTTTGGCAGCATCAGA
GATGACATGGTTTACAGCCAGAGGTATACAGCATCTCCAGGGAAGTGTTT
ATGCTTGCAAGGGTTTCTTCTTAGAAGGAGTAGGAGTCAGTCTCTGAAGT
AAACTATCCAAGGCTAAAGGGTCTCTGTGTGTGTTGAAGTTAGTTAAAAT
ACCCAACTTCACTTCTTAGGAACGATGGTATGTGTATATTTGTGAATACT
TATTCATGTGTAATATATACCTGAGCATTGAATGAAAATAAGGACCAAAA
GGTATTTTCTACGTACATGTGACTTATAAGAGGTTTTTGCTCTACTGGTA
GTGAGGTTCTTTCCTATGTTGTTTCTTCGGCATGTATTATACTTTCAACA
TCTCCAAGTTGTAACGCCCCTAAGTAAAAGTCAAATACTCCTCTCTTTTT
ACAATAGTCCCTCTCTGATCTCCTTCCCCCCCCTTTCG
ACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTA
TCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATT
GATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATGTCGGTTATC
GAGAATTTTATTGAGGAAGTTTGTTTCTTTATTCATATTATAATTTGCCC
TTAAGTTCTCTATTCTTGTTGCATCCCTCTCTTTCCTTATTCTCACAGTT
TTACTTGTCTTTCTTTCACTATTCCGACTTATAGCACTCTTCATACTTCT
TTTCCGCGCCTTTTCCTTTTTTTCTCCATCCTTTCCCATATTCTTTTCTC
TTCTTTTTTTCCTCCCCCCTCCCTCCCCTTTTTCCCTCTTCCCCTTTACT
TTTTCCTCTTTCCCTTTTATTTTTCCCCCCCCCCCCTTTTTTATCTCCTT
TCTACCTTATTTCTATTTTACTATACTTATTTCCCTGCTTTCTTTCTTTT
CTTTCTCTTTCTTTTTTTTCTTCCTCCTCTCTTTCCTCTCTTTTATTTCC
ATTTCCCCTTACTTTTTTTTCTTCACCTTATTATTTTTTCTCCCTTTCCT
CTTCATTTTATGTCCTTTTCTCCTTCTTTTTTCTTCCTTCTTTTTCTTTT
TCCATCTTTCCTATCTATCTCTTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_h02.b1 MSMg01no456_h02.b1 CHROMAT_FILE:
MSMg01no456_h02.b1 PHD_FILE: MSMg01no456_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:16 2005
         (491 letters)



>mm_chr1_61730761_61731651
          Length = 891

 Score =  903 bits (467), Expect = 0.0
 Identities = 482/487 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatattaatggagacatatagtcacaacagtgatgtaaaagagtttcagcgaat 64
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatataaatggaaacatatagtcacaacagtgatgtaaaagagtttcagcgaat 264

                                                                       
Query: 65  gctggtaagttgtcatgtaaatgcatcttctgacctttgtgcatccattggtattggtgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctggtaagttgtcatgtaaatgcatcttctgacctttgtgcatccattggtattggtgc 324

                                                                       
Query: 125 aaagggtctaactgtcaatgaaggagcagctagcaggtgaaattcagactgtcgtggctg 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 aaagggtttaactgtcaatgaaggagcagctagcaggtgaaattcagactgtcatggctg 384

                                                                       
Query: 185 ggaagggacaagggactaggaacttgtggtaaaggacctttttgtccgtgactgtttttg 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaagggacaaggggctaggaacttgtggtaaaggacctttttgtccgtgactgtttttg 444

                                                                       
Query: 245 gcagcatcagagatgacatggtttacagccagaggtatacagcatctccagggaagtgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagcatcagagatgacatggtttacagccagaggtatacagcatctccagggaagtgtt 504

                                                                       
Query: 305 tatgcttgcaagggtttcttcttagaaggagtaggagtcagtctctgaagtaaactatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgcttgcaagggtttcttcttagaaggagtaggagtcagtctctgaagtaaactatcc 564

                                                                       
Query: 365 aaggctaaagggtctctgtgtgtgttgaagttagttaaaatacccaacttcacttcttag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggctaaagggtctctgtgtgtgttgaagttagttaaaatacccaacttcacttcttag 624

                                                                       
Query: 425 gaacgatggtatgtgtatatttgtgaatacttattcatgtgtaatatatacctgagcatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaacgatggtatgtgtatatttgtgaatacttattcatgtgtaatatatacctgagcatt 684

                  
Query: 485 gaatgaa 491
           |||||||
Sbjct: 685 gaatgaa 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)