BAC Information

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BAC

Clone NameMSMg01-457D08
Chromosome1 (Build37)
Map Location 172,719,468 - 172,856,457
singlet/doubletdoublet
Overlap geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneFcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457D08.T7 (MSMg01no457_d08.b1)MSMg01-457D08.TJ (MSMg01no457_d08.g1)
ACCAG543329AG543330
length765791
length of high quality
(start - end)		424 (74 - 497)382 (80 - 461)
definitionCHROMAT_FILE: MSMg01no457_d08.b1 PHD_FILE: MSMg01no457_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:20 2005CHROMAT_FILE: MSMg01no457_d08.g1 PHD_FILE: MSMg01no457_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,856,034 - 172,856,457)(172,719,468 - 172,719,849)
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATCCGCG
GAATTCTCTCTACATTCCGAGAGACTTCTAAAACTCCAGCTCTTGTTGTG
GCACATAAAACCCCAAACCTGGTACCCACTAAACCCCCTCAGCCTCTTTG
GCATACCCAAAGCCTTCCCACTTCCACTCTCACAAAACTCAATGAGCCTG
CATTTCCATTCACAGCCCAGATTCCTATCTGCCTCCGAGATTTGCTTATA
TTGTTAGCTCCATCTGAAATGACCTCTGCCATGACTCCCCAGTCCCCTCC
CCCTTTACAAGCATCTAAGTATCCTTAAAGACTCCATCTTGAGAGCATCT
TCTGAAAGAAGCCTTGTTGGATCCCCAGTGGCTGCCCCTGACACTTTGTT
ATTGCTGTTATCCAAACACTACAACAATCCTTTCTTATGCATGGTCTTCC
ACCAAACCCAGAGCTATTTGTGGGAGGCCCAGGTTTTTGGTTTTGTAGCA
AGAACTGTGGTCTTGTATCAGGTACTCTGACTTCCGGCTCCTCTCCCAGT
TACTACTTTTATATCACTTGGAAAAATTCCCTTTCTGTTGAGCATAGAAG
CATGTCTTGGAACTTTTAAACCCAGGTCTAAAAAACCCGAGGCATGAAGA
ATGGCCCCCATTCTAAGTCAGCCCAAGCTCCATTGTGAAGACCCAAAAAC
TCTCGGGGAGGGCTTAAAAAAAAAATGGGTTTATAAAAAAAAAAAACACC
CCTCCCGGTTAAAAG

NNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAATTATCGTGTTCATACA
TCCATCTTTACATGAAGTAAGGCTTCAAATTTAGACATCTGATTTCCTGT
AAGAAGCTTGAGGTATGACTGGGGGGAAGTTCTATAAAACAATAAAGTAT
GATATAGAGTAAAACAGAATCAAATACAAAATGCTTAAGGGAAAAAAAGA
GAATAAGTACTTTTGGTAAATGGAACCAGTGTGTGAAGATGACCATAAGG
TTTCCAATTTCTGGATCTACAACAAGGTTCTTATTTGATGACTAGCAAAT
ACATCCATGCATATCCATAACTGCTACACTAGTCACTTAGTAGGCATCTC
AGTCCTCAGATCAACTGCCATGCTATAGCAGTGCTTGTATAAAGATAATA
TTATTTAAAAGTCCAAGAGTACAGCCAGGCAGTGGCGGTGCATCCCTTTA
ATCCTAGCACTCGGTAGGTAGAGGCATGTGGATTTTCTGAGTTTGATTCC
TGCCTGTTTCATTTAGTGATTTCTCTTTACTGCCTTTTACTTTTTTTAAT
ATCCCTTGGCTTCCTTTTTTTCACCACTTATTTCTTTTAATCTTTCTTAT
ATTTACTTGTCCCGGTGTCGTTTTTATCAATTCTTTTTTTTTCTTTATTA
TGTTCCCTTTTATCTACTTTCTTCTTCCTCTTATCTCTCCATTTATCATT
ATTTCCCTCTTTTCCTTATCTCTATTCTCTATTTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_d08.b1 MSMg01no457_d08.b1 CHROMAT_FILE:
MSMg01no457_d08.b1 PHD_FILE: MSMg01no457_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:20 2005
         (424 letters)



>mm_chr1_172855834_172856657
          Length = 824

 Score =  820 bits (424), Expect = 0.0
 Identities = 424/424 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctaaaactccagctcttgttgtggcacataaaaccccaaacctggtacccactaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acttctaaaactccagctcttgttgtggcacataaaaccccaaacctggtacccactaaa 565

                                                                       
Query: 61  ccccctcagcctctttggcatacccaaagccttcccacttccactctcacaaaactcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccccctcagcctctttggcatacccaaagccttcccacttccactctcacaaaactcaat 505

                                                                       
Query: 121 gagcctgcatttccattcacagcccagattcctatctgcctccgagatttgcttatattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagcctgcatttccattcacagcccagattcctatctgcctccgagatttgcttatattg 445

                                                                       
Query: 181 ttagctccatctgaaatgacctctgccatgactccccagtcccctccccctttacaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttagctccatctgaaatgacctctgccatgactccccagtcccctccccctttacaagca 385

                                                                       
Query: 241 tctaagtatccttaaagactccatcttgagagcatcttctgaaagaagccttgttggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctaagtatccttaaagactccatcttgagagcatcttctgaaagaagccttgttggatc 325

                                                                       
Query: 301 cccagtggctgcccctgacactttgttattgctgttatccaaacactacaacaatccttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccagtggctgcccctgacactttgttattgctgttatccaaacactacaacaatccttt 265

                                                                       
Query: 361 cttatgcatggtcttccaccaaacccagagctatttgtgggaggcccaggtttttggttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttatgcatggtcttccaccaaacccagagctatttgtgggaggcccaggtttttggttt 205

               
Query: 421 tgta 424
           ||||
Sbjct: 204 tgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no457_d08.g1 MSMg01no457_d08.g1 CHROMAT_FILE:
MSMg01no457_d08.g1 PHD_FILE: MSMg01no457_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:20 2005
         (382 letters)



>mm_chr1_172719268_172720049
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaattatcgtgttcatacatccatctttacatgaagtaaggcttcaaatttagacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaattatcgtgttcatacatccatctttacatgaagtaaggcttcaaatttagacatc 260

                                                                       
Query: 61  tgatttcctgtaagaagcttgaggtatgactggggggaagttctataaaacaataaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatttcctgtaagaagcttgaggtatgactggggggaagttctataaaacaataaagta 320

                                                                       
Query: 121 tgatatagagtaaaacagaatcaaatacaaaatgcttaagggaaaaaaagagaataagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatatagagtaaaacagaatcaaatacaaaatgcttaagggaaaaaaagagaataagta 380

                                                                       
Query: 181 cttttggtaaatggaaccagtgtgtgaagatgaccataaggtttccaatttctggatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttggtaaatggaaccagtgtgtgaagatgaccataaggtttccaatttctggatcta 440

                                                                       
Query: 241 caacaaggttcttatttgatgactagcaaatacatccatgcatatccataactgctacac 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacaagggccttatttgatgactagcaaatacatccatgcatatccataactgctacac 500

                                                                       
Query: 301 tagtcacttagtaggcatctcagtcctcagatcaactgccatgctatagcagtgcttgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtcacttagtaggcatctcagtcctcagatcaactgccatgctatagcagtgcttgta 560

                                 
Query: 361 taaagataatattatttaaaag 382
           ||||||||||||||||||||||
Sbjct: 561 taaagataatattatttaaaag 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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