NNAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGGGAGTTTCTCCCCCTCAGAGAAGGAAGAAAGAGAGACA
CTCTAGGGAAAGCCCTGGGTAGCCTCATCTACACTGGAAAGAGGCAGACT
GTTCTAGAAAGGGCAGGATTGGGTTCTGTGCACCTCCACTGAGTAGGCAT
GACATGTCCAACTGATTTTATCTTTGCTTCAACTACAATTATCATTTCCA
TAGATTTAGACAGTACTGAAATATATCTCACTATCTCTACTTATCAATGA
TGAAATTTAACTGTCCTCTGTTTTGTATTCATTATCACTACTTGTAGGGC
CCCTTAACTGTTTTGTTTTCCAAGGACCAGGTAAAAAACAAAGAGACTTT
AAATCACACAACCGCACACGTGTGCTAGGTCCATGTTTAAACCCTTTCCT
AATTCTGGAGTTGCCAAGTGCTCCTCAGAGTTGTGAAATCCTATTTTAAA
GTACATTTATCAGATGTTAGGTATCCAAATGTAATGTCCTGATATTTCAG
CCAACTTACAGCCTCCAAAAATACTTCTGGGAATTGCTCACAAGAACTAA
CTTTTGAAAATATTATACATGTCTTGAGGATCTTGCTGGTACCCCAGGGA
AATTCTTTGAAGACAGACATAATTTATGGGCCTAACGGAAGTTTTTTTGA
ATTCCCGTGTAAAAAAAATGAATGGGGAAAAAAAAATTTCTTTTTGAGGG
TATGG

NAAATTTTACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTGTAGAGTAGG
CTTCCAATCCAGTCAGGGGACTGATTGTTCATCTCCACCAACATTTTACT
GTTATTGCACTGGTAGAAACATCTTTGCTGGTAGGTCAATATTCAGTATC
CAGTACTGGGCAAGACTGTTGCTGTCTTTTCTCACCCAGCAGCCTGCATA
GCATCTTGTAACACCATGAAATACAGCCAGCAGGCAGAGTTTCTTGCTTA
GTTGAAGACTAATTCTGTATCCTACAACCAAAATGTGTGGTGTCTTCACC
AATAGGGTCTTACTGTCTAGTTGAAGTAGATAACCAAAAGCAATGACAAT
AGACTCCATTGCTTCCAGTGTCTCTGAGGCCTCTCTGGNCAAAAATTTAT
AGGGAAATAACTGCTACCCACTGAACAAAAGAGGTTCTGTGGGCCAGTAT
GAGAGCAGTAGAACTCTTTGGGTATTAATCAATATTTTAATAACCAGTTT
GACAACACCACCCTTTTTTAAAAACAATTTTAATAAGCTCTCTATTATTG
GGCCGGGGAATTCCCCCCGGGATTAAAATCTTTGTTCGCGCTTAAAAAAA
AAAGGGTAAAATTCTCCCCCCGGGTTATGGAAAAAAATTGTTAAAATATT
GTTGTCCGCGCTTTTTTATTTTTTTTTGTTACTAATGGGGGTTTTAACCC
CACTTTTCCCTGTCTCTACTTTGGTTTTATACTAATAAAAAA

Query= MSMg01no457_d22.b1 MSMg01no457_d22.b1 CHROMAT_FILE:
MSMg01no457_d22.b1 PHD_FILE: MSMg01no457_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:23 2005
         (464 letters)



>mm_chr1_24297848_24298709
          Length = 862

 Score =  762 bits (394), Expect = 0.0
 Identities = 443/460 (96%), Gaps = 2/460 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgggagtttctccccctcagagaaggaagaaagagagacactctagggaaagcc 64
           ||||||||||||  | |||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 205 gaattctgggaggctatccccctcagagaaggaagaaagagagaaattctagggaaagcc 264

                                                                       
Query: 65  ctgggtagcctcatctacactggaaagaggcagactgttctagaaagggcaggattgggt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ctgggtagcctcatctacactggaaagaggcagactgttctagaaagggcaggagtgggt 324

                                                                       
Query: 125 tctgtgcacctccactgagtaggcatgacatgtccaactgattttatctttgcttcaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgtgcacctccactgagtaggcatgacatgtccaactgattttatctttgcttcaact 384

                                                                       
Query: 185 acaattatcatttccatagatttagacagtactgaaatatatctcactatctctacttat 244
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 acaattatcatttcgatagatttagacagtactgaaatatatctcactatctctacgtat 444

                                                                       
Query: 245 caatgatgaaatttaactgtcctctgttttgtattcattatcactacttgtagggcccct 304
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||
Sbjct: 445 caatgatgaaatttaactgtcctctgttttgtagccattatcactacttgtagggcctct 504

                                                                       
Query: 305 taactgttttgttttccaaggaccaggtaaaaaacaaagagactttaaatcacacaaccg 364
           ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| |
Sbjct: 505 taactgttttgttttccaaggaccaggtaaaaaaca--gacactttaaatcacacaactg 562

                                                                       
Query: 365 cacacgtgtgctaggtccatgtttaaaccctttcctaattctggagttgccaagtgctcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cacacgtgtgctaggtccatgtttaaaccctttcctaattctggagttgccaagtgctcc 622

                                                   
Query: 425 tcagagttgtgaaatcctattttaaagtacatttatcaga 464
           |  |||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgggagttgtgaaatcctattttaaagtacatttatcaga 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 862
Length adjustment: 10
Effective length of query: 454
Effective length of database: 852
Effective search space:   386808
Effective search space used:   386808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)